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@Gabaldonlab

Gabaldon lab

Github repository of Gabaldon lab

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  1. redundans redundans Public

    Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

    C++ 143 20

  2. perSVade perSVade Public

    perSVade: personalized Structural Variation detection

    Python 39 5

  3. haplotypo haplotypo Public

    This is the Haplotypo repository

    Python 20 6

  4. jloh jloh Public

    A tool to extract LOH blocks from VCF, BAM and FASTA data

    Python 21 3

Repositories

Showing 10 of 55 repositories
  • meTAline Public

    A snakemake pipeline for metagenomics analysis, it facilitates an efficient workflow to preprocess short reads metagenomics data: from read trimming and filtering, through host read subtraction to taxonomic classification using both k-mer and gene marker-based approaches, and functional profiling of the samples.

    Gabaldonlab/meTAline’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Apr 3, 2025
  • redundans Public

    Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

    Gabaldonlab/redundans’s past year of commit activity
    C++ 143 GPL-3.0 20 1 0 Updated Apr 2, 2025
  • structural_phylome Public

    Compute a sequence and structure based phylome based on uniprot proteomes.

    Gabaldonlab/structural_phylome’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Mar 24, 2025
  • Q-PHAST Public
    Gabaldonlab/Q-PHAST’s past year of commit activity
    Python 0 1 0 0 Updated Mar 19, 2025
  • singularity-technical-seminar Public

    Technical seminar on containerizing bioinformatics pipelines 📦 🧬 💻 👩🏻‍💻 🧪

    Gabaldonlab/singularity-technical-seminar’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 4, 2025
  • perSVade Public

    perSVade: personalized Structural Variation detection

    Gabaldonlab/perSVade’s past year of commit activity
    Python 39 GPL-3.0 5 0 0 Updated Feb 26, 2025
  • Cglabrata_tradeoffs Public
    Gabaldonlab/Cglabrata_tradeoffs’s past year of commit activity
    Python 0 0 0 0 Updated Dec 17, 2024
  • ghost_transfers Public Forked from moibernabeu/ghost_transfers
    Gabaldonlab/ghost_transfers’s past year of commit activity
    R 0 2 0 0 Updated Nov 19, 2024
  • phylogenetic-reconstruction-for-hybrids Public
    Gabaldonlab/phylogenetic-reconstruction-for-hybrids’s past year of commit activity
    Python 0 0 0 0 Updated Oct 28, 2024
  • karyon Public

    This is the Karyon Pipeline

    Gabaldonlab/karyon’s past year of commit activity
    Python 3 GPL-3.0 1 0 0 Updated Sep 13, 2024
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