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Added spatio-temporal scale #1576

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Added spatio-temporal scale #1576

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5a94173
Added spatio-temporal scale
timalamenciak Dec 12, 2024
d6df28b
Removed scale under qualitative and added under PATO age and size
timalamenciak Dec 16, 2024
b0d70b4
Merge branch 'EnvironmentOntology:master' into issue-1569
timalamenciak Feb 3, 2025
b3cd75f
Added landscape size and age scales revised according to feedback fro…
timalamenciak Feb 4, 2025
0370d3e
Added landscape scale and age with revisions from PL & CM
timalamenciak Feb 4, 2025
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98 changes: 97 additions & 1 deletion src/envo/envo-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -4136,6 +4136,14 @@ Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03605007>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03605008>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03605009>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620000>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620010>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620011>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620012>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620013>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620014>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620015>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620016>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_03620017>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_04000000>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_04000001>))
Declaration(Class(<http://purl.obolibrary.org/obo/ENVO_04000002>))
Expand Down Expand Up @@ -4332,6 +4340,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000323>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000963>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001351>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001360>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001486>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001576>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001595>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0001657>))
Expand Down Expand Up @@ -11159,9 +11168,9 @@ SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000424> <http://purl.obolibrar
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <https://en.wikipedia.org/wiki/Ocean_floor>) Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "MA:ma") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_00000426> "A marine bed which lies below an ocean.")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_00000426> "FTT:1020")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_00000426> "ocean bed")
AnnotationAssertion(Annotation(rdfs:comment "When \"ocean basin\" is used in a hydrological sense, then \"ocean basin floor\" is any floor under seawater. In ENVO, the class \"ocean basin\" is used in a geological sense, which does not include all areas of ocean floor.") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00000426> "ocean basin floor")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ADL:FTT") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00000426> "ocean floor feature")
AnnotationAssertion(Annotation(rdfs:comment "Seas are smaller than oceans and are usually located where the land and ocean meet. However, these two terms are often used interchangeably."@en) <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00000426> "seafloor"@en)
AnnotationAssertion(Annotation(rdfs:comment "When \"ocean basin\" is used in a hydrological sense, then \"ocean basin floor\" is any floor under seawater. In ENVO, the class \"ocean basin\" is used in a geological sense, which does not include all areas of ocean floor.") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/ENVO_00000426> "ocean basin floor")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_00000426> "ocean floor")
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000426> <http://purl.obolibrary.org/obo/ENVO_01001378>)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_00000426> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000050> <http://purl.obolibrary.org/obo/ENVO_00002450>))
Expand Down Expand Up @@ -46308,6 +46317,86 @@ AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibra
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620000> "biogeographic realm"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620000> <http://purl.obolibrary.org/obo/ENVO_01000254>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620010> (landscape megascale age)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620010> "Chronological age which inheres in a bearer by virtue of that bearer existing for at least 1,000,000 years.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620010> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620010> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620010> "2024-12-16T14:35:15Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_03620010> "https://en.wikipedia.org/wiki/Scale_(geography)")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620010> "landscape megascale age"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620010> <http://purl.obolibrary.org/obo/PATO_0001486>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620011> (landscape macroscale age)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620011> "Chronological age which inheres in a bearer by virtue of that bearer existing for between 10,000 and 1,000,000 years.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620011> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620011> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620011> "2024-12-16T14:35:25Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_03620011> "https://en.wikipedia.org/wiki/Scale_(geography)")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620011> "landscape macroscale age"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620011> <http://purl.obolibrary.org/obo/PATO_0001486>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620012> (landscape mesoscale age)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620012> "Chronological age which inheres in a bearer by virtue of that bearer existing for between 500 and 10,000 years.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620012> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620012> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620012> "2024-12-16T14:35:35Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_03620012> "https://en.wikipedia.org/wiki/Scale_(geography)")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620012> "landscape mesoscale age"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620012> <http://purl.obolibrary.org/obo/PATO_0001486>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620013> (landscape microscale age)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620013> "Chronological age which inheres in a bearer by virtue of that bearer existing for between1 and 500 years.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620013> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620013> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620013> "2024-12-16T14:35:46Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_03620013> "https://en.wikipedia.org/wiki/Scale_(geography)")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620013> "landscape microscale age"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620013> <http://purl.obolibrary.org/obo/PATO_0001486>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620014> (landscape megascale size)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620014> "An area quality which inheres in a bearer by virtue of that bearer having an area greater than 10,000,000,000,000 square metres")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620014> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620014> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620014> "2024-12-16T14:43:20Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_03620014> "https://en.wikipedia.org/wiki/Scale_(geography)")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620014> "landscape megascale size"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620014> <http://purl.obolibrary.org/obo/PATO_0001323>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620015> (landscape macroscale size)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620015> "An area quality which inheres in a bearer by virtue of that bearer having an area of between 10,000,000,000 and 10,000,000,000,000 square metres")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620015> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620015> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620015> "2024-12-16T14:43:33Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_03620015> "https://en.wikipedia.org/wiki/Scale_(geography)")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620015> "landscape macroscale size"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620015> <http://purl.obolibrary.org/obo/PATO_0001323>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620016> (landscape mesoscale size)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620016> "An area quality which inheres in a bearer by virtue of that bearer having an area of between 1,000,000 and 10,000,000,000 square metres.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620016> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620016> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620016> "2024-12-16T14:43:40Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_03620016> "https://en.wikipedia.org/wiki/Scale_(geography)")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620016> "landscape mesoscale size"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620016> <http://purl.obolibrary.org/obo/PATO_0001323>)

# Class: <http://purl.obolibrary.org/obo/ENVO_03620017> (landscape microscale size)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_03620017> "An area quality which inheres in a bearer by virtue of that bearer having an area of between 0 and 1,000,000 square metres")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/contributor> <http://purl.obolibrary.org/obo/ENVO_03620017> "https://orcid.org/0000-0002-4366-3088")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/ENVO_03620017> <https://orcid.org/0000-0002-1296-2528>)
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/ENVO_03620017> "2024-12-16T14:43:48Z"^^xsd:dateTime)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/ENVO_03620017> "https://en.wikipedia.org/wiki/Scale_(geography)")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/ENVO_03620017> "landscape microscale size"@en)
SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03620017> <http://purl.obolibrary.org/obo/PATO_0001323>)

# Class: <http://purl.obolibrary.org/obo/ENVO_04000000> (adfreezing)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://www.merriam-webster.com/dictionary/adfreezing") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/ENVO_04000000> "Adfreezing is a freezing process during which two objects adhere to each other via ice.")
Expand Down Expand Up @@ -48367,6 +48456,12 @@ SubClassOf(<http://purl.obolibrary.org/obo/OBI_0000967> <http://purl.obolibrary.

SubClassOf(<http://purl.obolibrary.org/obo/OBI_0000968> <http://purl.obolibrary.org/obo/ENVO_00003074>)

# Class: <http://purl.obolibrary.org/obo/PATO_0001486> (chronological age)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/PATO_0001486> "An age quality that exists by virtue of the time (years and months) that the bearer has existed.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PATO_0001486> "chronological age")
SubClassOf(<http://purl.obolibrary.org/obo/PATO_0001486> <http://purl.obolibrary.org/obo/PATO_0000011>)


############################
# Named Individuals
Expand Down Expand Up @@ -48903,6 +48998,7 @@ AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <htt
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000111> "editor preferred term~editor preferred label")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000412> "imported from")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000424> "expand expression to")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/PATO_0000068> "A quality of an entity that is descriptive or observational, typically not represented numerically.")
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Not sure what's happening here in the Named Individuals block - could you clarify?

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@timalamenciak timalamenciak Feb 3, 2025 •
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I'm not sure myself, but I believe that this resulted from me improperly importing PATO:0001486

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/RO_0001900> "An assertion that holds between an OWL Object Property and a temporal interpretation that elucidates how OWL Class Axioms that use this property are to be interpreted in a temporal context.")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/RO_0001900> "temporal interpretation")
)
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