Disease Ontology: Mapping of ICD10 codes to DOID

[andaldanar]

I recently discovered Disease Ontology, and I have found the mapping files in HumanDiseaseOntology/src/DOreports/ incredibly useful - thank you for such great work!

I would like to know if there is a file/table/CSV that has mappings of ICD10 codes to DOID? I’m not that familiar with many of the filetypes in the repo, but I was wondering if such a table exists as the ones in the DOreports.

Thank you for your help!

Andres

[allenbaron]

Hi Andres,
We're glad to hear the Disease Ontology is useful to you. We'd love to hear more about your use case.

The mapping files in DOreports are not regularly updated. They were generated for a test we did a few months ago. I've created an up-to-date dump of all the DOID mappings to external sources (DO's xrefs), including ICD-10 codes (download: XREFSinDO_v2022-06-07.csv). The data correspond to the latest DO release: v2022-06-07 and were extracted directly from the doid.owl file using the SPARQL query language.

Let us know if this meets your needs and if there's anything else we can help with.

Best,
Allen

[andaldanar]

Hi Allen,

I'm trying to map clinical trials (AACT database) to their ICD10 codes using MeSH terms.

Thank you so much for the file - it is very helpful!

I just added to the list learning to query owl files using SPARQL :)

Best regards,
Andres

[allenbaron]

For anyone looking for a tsv of mappings/cross-references (xrefs) between diseases in the Human Disease Ontology and other clinical vocabularies, an xrefs_in_DO.tsv file will now be generated with each data release and can be found in the DOreports directory.