Small code fixes in panpipes_ingest #144
Merged
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Fixed two small bugs in panpipes_ingest.
The mdata wasn't updated in run_scanpyQC_rna.py, so no QC metrics were saved in _unfilt.h5mu.
Added
@active_if(PARAMS["scr_run"])
, so that scrublet is only run when it is specified in the yaml to run it.