move tests one directory up #834

CompEvol · Jun 20, 2022 · ed45a73 · ed45a73 · rbouckaert · Jun 20, 2022
1 parent 25b5e40
commit ed45a73
Show file tree

Hide file tree

Showing 84 changed files with 0 additions and 0 deletions.
diff --git a/test/test/test/beast/BEASTTestCase.java → test/test/beast/BEASTTestCase.java b/test/test/test/beast/BEASTTestCase.java → test/test/beast/BEASTTestCase.java
diff --git a/.../test/beast/beast2vs1/ClockModelTest.java → .../test/beast/beast2vs1/ClockModelTest.java b/.../test/beast/beast2vs1/ClockModelTest.java → .../test/beast/beast2vs1/ClockModelTest.java
diff --git a/...t/test/beast/beast2vs1/StarBEASTTest.java → test/test/beast/beast2vs1/StarBEASTTest.java b/...t/test/beast/beast2vs1/StarBEASTTest.java → test/test/beast/beast2vs1/StarBEASTTest.java
diff --git a/...east/beast2vs1/SubstitutionModelTest.java → ...east/beast2vs1/SubstitutionModelTest.java b/...east/beast2vs1/SubstitutionModelTest.java → ...east/beast2vs1/SubstitutionModelTest.java
diff --git a/.../test/beast/beast2vs1/TaxonOrderTest.java → .../test/beast/beast2vs1/TaxonOrderTest.java b/.../test/beast/beast2vs1/TaxonOrderTest.java → .../test/beast/beast2vs1/TaxonOrderTest.java
diff --git a/...t/test/beast/beast2vs1/TestFramework.java → test/test/beast/beast2vs1/TestFramework.java b/...t/test/beast/beast2vs1/TestFramework.java → test/test/beast/beast2vs1/TestFramework.java
diff --git a/...est/test/beast/beast2vs1/TipTimeTest.java → test/test/beast/beast2vs1/TipTimeTest.java b/...est/test/beast/beast2vs1/TipTimeTest.java → test/test/beast/beast2vs1/TipTimeTest.java
diff --git a/...t/test/beast/beast2vs1/TreePriorTest.java → test/test/beast/beast2vs1/TreePriorTest.java b/...t/test/beast/beast2vs1/TreePriorTest.java → test/test/beast/beast2vs1/TreePriorTest.java
diff --git a/test/test/test/beast/beast2vs1/TreeTest.java → test/test/beast/beast2vs1/TreeTest.java b/test/test/test/beast/beast2vs1/TreeTest.java → test/test/beast/beast2vs1/TreeTest.java
diff --git a/...t/beast2vs1/trace/DiscreteStatistics.java → ...t/beast2vs1/trace/DiscreteStatistics.java b/...t/beast2vs1/trace/DiscreteStatistics.java → ...t/beast2vs1/trace/DiscreteStatistics.java
diff --git a/...st/beast/beast2vs1/trace/Expectation.java → ...st/beast/beast2vs1/trace/Expectation.java b/...st/beast/beast2vs1/trace/Expectation.java → ...st/beast/beast2vs1/trace/Expectation.java
diff --git a/...st/beast/beast2vs1/trace/LogAnalyser.java → ...st/beast/beast2vs1/trace/LogAnalyser.java b/...st/beast/beast2vs1/trace/LogAnalyser.java → ...st/beast/beast2vs1/trace/LogAnalyser.java
diff --git a/.../beast/beast2vs1/trace/LogFileTraces.java → .../beast/beast2vs1/trace/LogFileTraces.java b/.../beast/beast2vs1/trace/LogFileTraces.java → .../beast/beast2vs1/trace/LogFileTraces.java
diff --git a/...east/beast2vs1/trace/NumberFormatter.java → ...east/beast2vs1/trace/NumberFormatter.java b/...east/beast2vs1/trace/NumberFormatter.java → ...east/beast2vs1/trace/NumberFormatter.java
diff --git a/...beast/beast2vs1/trace/TraceException.java → ...beast/beast2vs1/trace/TraceException.java b/...beast/beast2vs1/trace/TraceException.java → ...beast/beast2vs1/trace/TraceException.java
diff --git a/...east/beast2vs1/trace/TraceStatistics.java → ...east/beast2vs1/trace/TraceStatistics.java b/...east/beast2vs1/trace/TraceStatistics.java → ...east/beast2vs1/trace/TraceStatistics.java
diff --git a/...test/beast/beast2vs1/trace/TraceType.java → ...test/beast/beast2vs1/trace/TraceType.java b/...test/beast/beast2vs1/trace/TraceType.java → ...test/beast/beast2vs1/trace/TraceType.java
diff --git a/...beast/beast2vs1/trace/TrimLineReader.java → ...beast/beast2vs1/trace/TrimLineReader.java b/...beast/beast2vs1/trace/TrimLineReader.java → ...beast/beast2vs1/trace/TrimLineReader.java
diff --git a/...t2vs1/tutorials/DivergenceDatingTest.java → ...t2vs1/tutorials/DivergenceDatingTest.java b/...t2vs1/tutorials/DivergenceDatingTest.java → ...t2vs1/tutorials/DivergenceDatingTest.java
diff --git a/...beast2vs1/tutorials/RateTutorialTest.java → ...beast2vs1/tutorials/RateTutorialTest.java b/...beast2vs1/tutorials/RateTutorialTest.java → ...beast2vs1/tutorials/RateTutorialTest.java
diff --git a/...t/test/beast/core/BEASTInterfaceTest.java → test/test/beast/core/BEASTInterfaceTest.java b/...t/test/beast/core/BEASTInterfaceTest.java → test/test/beast/core/BEASTInterfaceTest.java
diff --git a/...ore/InputForAnnotatedConstructorTest.java → ...ore/InputForAnnotatedConstructorTest.java b/...ore/InputForAnnotatedConstructorTest.java → ...ore/InputForAnnotatedConstructorTest.java
diff --git a/test/test/test/beast/core/InputTest.java → test/test/beast/core/InputTest.java b/test/test/test/beast/core/InputTest.java → test/test/beast/core/InputTest.java
diff --git a/test/test/test/beast/core/LoggerTest.java → test/test/beast/core/LoggerTest.java b/test/test/test/beast/core/LoggerTest.java → test/test/beast/core/LoggerTest.java
diff --git a/...test/beast/core/OperatorScheduleTest.java → ...test/beast/core/OperatorScheduleTest.java b/...test/beast/core/OperatorScheduleTest.java → ...test/beast/core/OperatorScheduleTest.java
diff --git a/...test/beast/core/PrimitiveBeastObject.java → ...test/beast/core/PrimitiveBeastObject.java b/...test/beast/core/PrimitiveBeastObject.java → ...test/beast/core/PrimitiveBeastObject.java
diff --git a/...t/test/beast/core/PrimitiveInterface.java → test/test/beast/core/PrimitiveInterface.java b/...t/test/beast/core/PrimitiveInterface.java → test/test/beast/core/PrimitiveInterface.java
diff --git a/.../beast/core/StateNodeInitialiserTest.java → .../beast/core/StateNodeInitialiserTest.java b/.../beast/core/StateNodeInitialiserTest.java → .../beast/core/StateNodeInitialiserTest.java
diff --git a/...e/parameter/BooleanParameterListTest.java → ...e/parameter/BooleanParameterListTest.java b/...e/parameter/BooleanParameterListTest.java → ...e/parameter/BooleanParameterListTest.java
diff --git a/...e/parameter/IntegerParameterListTest.java → ...e/parameter/IntegerParameterListTest.java b/...e/parameter/IntegerParameterListTest.java → ...e/parameter/IntegerParameterListTest.java
diff --git a/...t/beast/core/parameter/ParameterTest.java → ...t/beast/core/parameter/ParameterTest.java b/...t/beast/core/parameter/ParameterTest.java → ...t/beast/core/parameter/ParameterTest.java
diff --git a/...core/parameter/RealParameterListTest.java → ...core/parameter/RealParameterListTest.java b/...core/parameter/RealParameterListTest.java → ...core/parameter/RealParameterListTest.java
diff --git a/test/test/test/beast/core/util/SumTest.java → test/test/beast/core/util/SumTest.java b/test/test/test/beast/core/util/SumTest.java → test/test/beast/core/util/SumTest.java
diff --git a/...tion/alignment/FilteredAlignmentTest.java → ...tion/alignment/FilteredAlignmentTest.java b/...tion/alignment/FilteredAlignmentTest.java → ...tion/alignment/FilteredAlignmentTest.java
diff --git a/...ion/alignment/UncertainAlignmentTest.java → ...ion/alignment/UncertainAlignmentTest.java b/...ion/alignment/UncertainAlignmentTest.java → ...ion/alignment/UncertainAlignmentTest.java
diff --git a/...lution/datatype/DataTypeDeEncodeTest.java → ...lution/datatype/DataTypeDeEncodeTest.java b/...lution/datatype/DataTypeDeEncodeTest.java → ...lution/datatype/DataTypeDeEncodeTest.java
diff --git a/...t/evolution/datatype/IntegerDataTest.java → ...t/evolution/datatype/IntegerDataTest.java b/...t/evolution/datatype/IntegerDataTest.java → ...t/evolution/datatype/IntegerDataTest.java
diff --git a/...lution/likelihood/TreeLikelihoodTest.java → ...lution/likelihood/TreeLikelihoodTest.java b/...lution/likelihood/TreeLikelihoodTest.java → ...lution/likelihood/TreeLikelihoodTest.java
diff --git a/...or/BactrianDeltaExchangeOperatorTest.java → ...or/BactrianDeltaExchangeOperatorTest.java b/...or/BactrianDeltaExchangeOperatorTest.java → ...or/BactrianDeltaExchangeOperatorTest.java
diff --git a/...perator/BactrianIntervalOperatorTest.java → ...perator/BactrianIntervalOperatorTest.java b/...perator/BactrianIntervalOperatorTest.java → ...perator/BactrianIntervalOperatorTest.java
diff --git a/...rator/BactrianRandomWalkOperatorTest.java → ...rator/BactrianRandomWalkOperatorTest.java b/...rator/BactrianRandomWalkOperatorTest.java → ...rator/BactrianRandomWalkOperatorTest.java
diff --git a/...n/operator/BactrianScaleOperatorTest.java → ...n/operator/BactrianScaleOperatorTest.java b/...n/operator/BactrianScaleOperatorTest.java → ...n/operator/BactrianScaleOperatorTest.java
diff --git a/.../operator/BactrianUpDownOperatorTest.java → .../operator/BactrianUpDownOperatorTest.java b/.../operator/BactrianUpDownOperatorTest.java → .../operator/BactrianUpDownOperatorTest.java
diff --git a/...operator/CompoundParameterHelperTest.java → ...operator/CompoundParameterHelperTest.java b/...operator/CompoundParameterHelperTest.java → ...operator/CompoundParameterHelperTest.java
diff --git a/...n/operator/DeltaExchangeOperatorTest.java → ...n/operator/DeltaExchangeOperatorTest.java b/...n/operator/DeltaExchangeOperatorTest.java → ...n/operator/DeltaExchangeOperatorTest.java
diff --git a/...lution/operator/ExchangeOperatorTest.java → ...lution/operator/ExchangeOperatorTest.java b/...lution/operator/ExchangeOperatorTest.java → ...lution/operator/ExchangeOperatorTest.java
diff --git a/...n/operator/IntRandomWalkOperatorTest.java → ...n/operator/IntRandomWalkOperatorTest.java b/...n/operator/IntRandomWalkOperatorTest.java → ...n/operator/IntRandomWalkOperatorTest.java
diff --git a/...ution/operator/KernelDistiburionTest.java → ...ution/operator/KernelDistiburionTest.java b/...ution/operator/KernelDistiburionTest.java → ...ution/operator/KernelDistiburionTest.java
diff --git a/...evolution/operator/ScaleOperatorTest.java → ...evolution/operator/ScaleOperatorTest.java b/...evolution/operator/ScaleOperatorTest.java → ...evolution/operator/ScaleOperatorTest.java
diff --git a/...east/evolution/operator/TestOperator.java → ...east/evolution/operator/TestOperator.java b/...east/evolution/operator/TestOperator.java → ...east/evolution/operator/TestOperator.java
diff --git a/.../operator/UniformIntegerOperatorTest.java → .../operator/UniformIntegerOperatorTest.java b/.../operator/UniformIntegerOperatorTest.java → .../operator/UniformIntegerOperatorTest.java
diff --git a/...iation/BirthDeathGernhard08ModelTest.java → ...iation/BirthDeathGernhard08ModelTest.java b/...iation/BirthDeathGernhard08ModelTest.java → ...iation/BirthDeathGernhard08ModelTest.java
diff --git a/...t/evolution/speciation/YuleModelTest.java → ...t/evolution/speciation/YuleModelTest.java b/...t/evolution/speciation/YuleModelTest.java → ...t/evolution/speciation/YuleModelTest.java
diff --git a/...n/substmodel/BinaryCovarionModelTest.java → ...n/substmodel/BinaryCovarionModelTest.java b/...n/substmodel/BinaryCovarionModelTest.java → ...n/substmodel/BinaryCovarionModelTest.java
diff --git a/...t/beast/evolution/substmodel/GTRTest.java → ...t/beast/evolution/substmodel/GTRTest.java b/...t/beast/evolution/substmodel/GTRTest.java → ...t/beast/evolution/substmodel/GTRTest.java
diff --git a/...stmodel/GeneralSubstitutionModelTest.java → ...stmodel/GeneralSubstitutionModelTest.java b/...stmodel/GeneralSubstitutionModelTest.java → ...stmodel/GeneralSubstitutionModelTest.java
diff --git a/...t/beast/evolution/substmodel/HKYTest.java → ...t/beast/evolution/substmodel/HKYTest.java b/...t/beast/evolution/substmodel/HKYTest.java → ...t/beast/evolution/substmodel/HKYTest.java
diff --git a/...t/test/beast/evolution/tree/NodeTest.java → test/test/beast/evolution/tree/NodeTest.java b/...t/test/beast/evolution/tree/NodeTest.java → test/test/beast/evolution/tree/NodeTest.java
diff --git a/.../beast/evolution/tree/RandomTreeTest.java → .../beast/evolution/tree/RandomTreeTest.java b/.../beast/evolution/tree/RandomTreeTest.java → .../beast/evolution/tree/RandomTreeTest.java
diff --git a/...st/beast/evolution/tree/TraitSetTest.java → ...st/beast/evolution/tree/TraitSetTest.java b/...st/beast/evolution/tree/TraitSetTest.java → ...st/beast/evolution/tree/TraitSetTest.java
diff --git a/...t/test/beast/evolution/tree/TreeTest.java → test/test/beast/evolution/tree/TreeTest.java b/...t/test/beast/evolution/tree/TreeTest.java → test/test/beast/evolution/tree/TreeTest.java
diff --git a/...t/beast/evolution/tree/TreeUtilsTest.java → ...t/beast/evolution/tree/TreeUtilsTest.java b/...t/beast/evolution/tree/TreeUtilsTest.java → ...t/beast/evolution/tree/TreeUtilsTest.java
diff --git a/.../tree/coalescent/BayesianSkylineTest.java → .../tree/coalescent/BayesianSkylineTest.java b/.../tree/coalescent/BayesianSkylineTest.java → .../tree/coalescent/BayesianSkylineTest.java
diff --git a/...ution/tree/coalescent/CoalescentTest.java → ...ution/tree/coalescent/CoalescentTest.java b/...ution/tree/coalescent/CoalescentTest.java → ...ution/tree/coalescent/CoalescentTest.java
diff --git a/...est/beast/integration/DependencyTest.java → ...est/beast/integration/DependencyTest.java b/...est/beast/integration/DependencyTest.java → ...est/beast/integration/DependencyTest.java
diff --git a/.../beast/integration/DocumentationTest.java → .../beast/integration/DocumentationTest.java b/.../beast/integration/DocumentationTest.java → .../beast/integration/DocumentationTest.java
diff --git a/...test/beast/integration/InputTypeTest.java → ...test/beast/integration/InputTypeTest.java b/...test/beast/integration/InputTypeTest.java → ...test/beast/integration/InputTypeTest.java
diff --git a/...beast/integration/XMLElementNameTest.java → ...beast/integration/XMLElementNameTest.java b/...beast/integration/XMLElementNameTest.java → ...beast/integration/XMLElementNameTest.java
diff --git a/...st/beast/integration/XMLProducerTest.java → ...st/beast/integration/XMLProducerTest.java b/...st/beast/integration/XMLProducerTest.java → ...st/beast/integration/XMLProducerTest.java
diff --git a/...t/beast/math/distributions/GammaTest.java → ...t/beast/math/distributions/GammaTest.java b/...t/beast/math/distributions/GammaTest.java → ...t/beast/math/distributions/GammaTest.java
diff --git a/...east/math/distributions/InvGammaTest.java → ...east/math/distributions/InvGammaTest.java b/...east/math/distributions/InvGammaTest.java → ...east/math/distributions/InvGammaTest.java
diff --git a/...istributions/LaplaceDistributionTest.java → ...istributions/LaplaceDistributionTest.java b/...istributions/LaplaceDistributionTest.java → ...istributions/LaplaceDistributionTest.java
diff --git a/...tions/LogNormalDistributionModelTest.java → ...tions/LogNormalDistributionModelTest.java b/...tions/LogNormalDistributionModelTest.java → ...tions/LogNormalDistributionModelTest.java
diff --git a/...ast/math/distributions/MRCAPriorTest.java → ...ast/math/distributions/MRCAPriorTest.java b/...ast/math/distributions/MRCAPriorTest.java → ...ast/math/distributions/MRCAPriorTest.java
diff --git a/...ons/MeanOfParametricDistributionTest.java → ...ons/MeanOfParametricDistributionTest.java b/...ons/MeanOfParametricDistributionTest.java → ...ons/MeanOfParametricDistributionTest.java
diff --git a/...distributions/NormalDistributionTest.java → ...distributions/NormalDistributionTest.java b/...distributions/NormalDistributionTest.java → ...distributions/NormalDistributionTest.java
diff --git a/...st/beast/statistic/RPNCalculatorTest.java → ...st/beast/statistic/RPNCalculatorTest.java b/...st/beast/statistic/RPNCalculatorTest.java → ...st/beast/statistic/RPNCalculatorTest.java
diff --git a/...east/util/AnnotatedRunnableTestClass.java → ...east/util/AnnotatedRunnableTestClass.java b/...east/util/AnnotatedRunnableTestClass.java → ...east/util/AnnotatedRunnableTestClass.java
diff --git a/...test/test/beast/util/ClusterTreeTest.java → test/test/beast/util/ClusterTreeTest.java b/...test/test/beast/util/ClusterTreeTest.java → test/test/beast/util/ClusterTreeTest.java
diff --git a/...test/test/beast/util/NexusParserTest.java → test/test/beast/util/NexusParserTest.java b/...test/test/beast/util/NexusParserTest.java → test/test/beast/util/NexusParserTest.java
diff --git a/.../test/test/beast/util/RandomizerTest.java → test/test/beast/util/RandomizerTest.java b/.../test/test/beast/util/RandomizerTest.java → test/test/beast/util/RandomizerTest.java
diff --git a/.../test/test/beast/util/TreeParserTest.java → test/test/beast/util/TreeParserTest.java b/.../test/test/beast/util/TreeParserTest.java → test/test/beast/util/TreeParserTest.java
diff --git a/test/test/test/beast/util/XMLParserTest.java → test/test/beast/util/XMLParserTest.java b/test/test/test/beast/util/XMLParserTest.java → test/test/beast/util/XMLParserTest.java
diff --git a/test/test/test/beast/util/XMLTest.java → test/test/beast/util/XMLTest.java b/test/test/test/beast/util/XMLTest.java → test/test/beast/util/XMLTest.java