Genome-wide analyses in Lyme borreliosis: identification of a genetic variant associated with disease susceptibility and its immunological implications

This repository contains all the R, shell and Snakemake scripts used for the genomewide association study of Lyme borreliosis.

Software used: PLINK 1.9, PLINK 2.00, R 4.2.0, Snakemake 6.10, tidyverse 1.3.1, ggplot 3.3.6, data.table 1.14.2, DESeq2 1.36.0, ggpubr 0.4.0, imputation-bot 0.9.4

Publication DOI: To be added.

Contact: Javier Botey-Bataller, Center for Individualized Infection Medicine and Radboudumc. email: [email protected]