Support PETSc 3.21 - 3.22 #713
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| name: Memory testing | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - '**' | |
| push: | |
| branches: | |
| - develop | |
| jobs: | |
| build-and-test: | |
| if: ${{ !contains(github.event.pull_request.labels.*.name, 'ci:off') }} | |
| runs-on: ubuntu-22.04 | |
| env: | |
| CHASTE_DIR: ${{ github.workspace }}/Chaste | |
| MEMTEST_DIR: ${{ github.workspace }}/memory-testing | |
| CHASTE_TEST_OUTPUT: ${{ github.workspace }}/chaste-test-dir | |
| CHASTE_BUILD_DIR: ${{ github.workspace }}/Chaste/chaste-build-dir | |
| steps: | |
| - name: get current datetime | |
| id: get-datetime | |
| run: echo "datetime=$(date +%Y-%m-%d_%H-%M-%S)" >> $GITHUB_OUTPUT | |
| - name: set environment for pull request | |
| run: | | |
| echo "Chaste_GH_WORKFLOW_BRANCH=${{ github.head_ref }}" >> $GITHUB_ENV | |
| echo "Chaste_GH_WORKFLOW_SHA=${{ github.event.pull_request.head.sha }}" >> $GITHUB_ENV | |
| if: github.event_name == 'pull_request' | |
| - name: set environment for push or workflow dispatch | |
| run: | | |
| echo "Chaste_GH_WORKFLOW_BRANCH=${{ github.ref_name }}" >> $GITHUB_ENV | |
| echo "Chaste_GH_WORKFLOW_SHA=${{ github.sha }}" >> $GITHUB_ENV | |
| if: (github.event_name == 'push') || (github.event_name == 'workflow_dispatch') | |
| - name: checkout Chaste | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: Chaste/Chaste | |
| path: Chaste | |
| - name: install dependencies | |
| run: | | |
| echo 'deb [signed-by=/usr/share/keyrings/chaste.asc] https://chaste.github.io/ubuntu jammy/' | sudo tee -a /etc/apt/sources.list.d/chaste.list | |
| sudo wget -O /usr/share/keyrings/chaste.asc https://chaste.github.io/chaste.asc | |
| sudo apt update | |
| sudo apt install chaste-dependencies | |
| - name: Downgrade libexpat1 (native ubuntu-22.04 only) | |
| # if: ${{ matrix.os == 'ubuntu-22.04' }} | |
| run: | | |
| if dpkg -l | grep libexpat1-dev | grep 2.4.7-1ubuntu; then | |
| sudo apt-get install -y --allow-downgrades libexpat1=2.4.7-1 libexpat1-dev=2.4.7-1 | |
| fi | |
| - name: make build and test directories | |
| run: | | |
| mkdir -p ${CHASTE_BUILD_DIR} | |
| mkdir -p ${CHASTE_TEST_OUTPUT} | |
| - name: cmake configure | |
| run: cmake -DCMAKE_BUILD_TYPE=Debug -DChaste_MEMORY_TESTING_CPUS=4 .. | |
| working-directory: ${{ env.CHASTE_BUILD_DIR }} | |
| - name: build continuous test pack | |
| run: cmake --build . --target Continuous --parallel 4 | |
| working-directory: ${{ env.CHASTE_BUILD_DIR }} | |
| - name: run memtest | |
| run: cmake --build . --target memtest --parallel 4 | |
| working-directory: ${{ env.CHASTE_BUILD_DIR }} | |
| - name: check if index file successfully created | |
| id: index-exists | |
| run: | | |
| if [ -e ${CHASTE_BUILD_DIR}/memtest/index.html ]; then | |
| echo "Index file exists" | |
| echo "index=True" >> $GITHUB_OUTPUT | |
| else | |
| echo "Index file does not exist" | |
| echo "index=False" >> $GITHUB_OUTPUT | |
| fi | |
| if: always() | |
| - name: checkout memory-testing | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: Chaste/memory-testing | |
| path: memory-testing | |
| fetch-depth: 0 | |
| token: ${{ secrets.MEMORY_TESTING_ACCESS }} | |
| if: always() && steps.index-exists.outputs.index == 'True' | |
| - name: copy results | |
| run: | | |
| mkdir ${MEMTEST_DIR}/log-files/${{ steps.get-datetime.outputs.datetime }} | |
| cp ${CHASTE_BUILD_DIR}/memtest/* ${MEMTEST_DIR}/log-files/${{ steps.get-datetime.outputs.datetime }}/ | |
| if: always() && steps.index-exists.outputs.index == 'True' | |
| - name: setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: generate index file | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install dominate | |
| python write_index.py | |
| working-directory: ${{ env.MEMTEST_DIR }} | |
| if: always() && steps.index-exists.outputs.index == 'True' | |
| - name: commit and push results | |
| run: | | |
| git config user.name "github-action" | |
| git config user.email "github-action" | |
| git add --all | |
| git commit -m "upload memtest results" || echo "No changes to commit" | |
| git push | |
| working-directory: ${{ env.MEMTEST_DIR }} | |
| if: always() && steps.index-exists.outputs.index == 'True' | |
| - name: results URL on chaste.github.io | |
| run: | | |
| echo https://chaste.github.io/memory-testing/${{ steps.get-datetime.outputs.datetime }}/index.html | |
| if: always() && steps.index-exists.outputs.index == 'True' |