fix dosdp label resolution

Cellular-Semantics · Nov 29, 2024 · bcc5589 · bcc5589
1 parent 3fc95fc
commit bcc5589
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Showing 18 changed files with 2,410 additions and 2,104 deletions.
diff --git a/clm-base.json b/clm-base.json
diff --git a/clm-base.obo b/clm-base.obo
diff --git a/clm-base.owl b/clm-base.owl
diff --git a/clm-cl.json b/clm-cl.json
@@ -899,10 +899,10 @@
           },
           {
             "pred": "http://www.w3.org/2002/07/owl#versionInfo",
-            "val": "2024-11-28"
+            "val": "2024-11-29"
           }
         ],
-        "version": "http://purl.obolibrary.org/obo/clm/releases/2024-11-28/clm-cl.json"
+        "version": "http://purl.obolibrary.org/obo/clm/releases/2024-11-29/clm-cl.json"
       },
       "nodes": [
         {
@@ -1965,7 +1965,7 @@
               }
             ],
             "comments": [
-              "The marker set POU2F3, HOMER3, MYB can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002075 in the Lung with a confidence of 0.56 (NS-Forest FBeta value)."
+              "The marker set POU2F3, HOMER3, MYB can identify the Human cell type brush cell of tracheobronchial tree in the Lung with a confidence of 0.56 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2010,7 +2010,7 @@
               }
             ],
             "comments": [
-              "The marker set LYPD2, MUC5AC can identify the Human cell type http://purl.obolibrary.org/obo/CL_0002480 in the Lung with a confidence of 0.81 (NS-Forest FBeta value)."
+              "The marker set LYPD2, MUC5AC can identify the Human cell type nasal mucosa goblet cell in the Lung with a confidence of 0.81 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2040,7 +2040,7 @@
               }
             ],
             "comments": [
-              "The marker set ASCL3, BSND can identify the Human cell type http://purl.obolibrary.org/obo/CL_0017000 in the Lung with a confidence of 0.82 (NS-Forest FBeta value)."
+              "The marker set ASCL3, BSND can identify the Human cell type pulmonary ionocyte in the Lung with a confidence of 0.82 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2085,8 +2085,8 @@
               }
             ],
             "comments": [
-              "The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.61 (NS-Forest FBeta value).",
-              "The marker set PLCG2, ANKRD36C can identify the Human cell type http://purl.obolibrary.org/obo/CL_1000312 in the Lung with a confidence of 0.55 (NS-Forest FBeta value)."
+              "The marker set MTRNR2L8, SCGB1A1 can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value).",
+              "The marker set PLCG2, ANKRD36C can identify the Human cell type bronchial goblet cell in the Lung with a confidence of 0.55 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2101,7 +2101,7 @@
               }
             ],
             "comments": [
-              "The marker set LINC00298, KIT can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023011 in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value)."
+              "The marker set LINC00298, KIT can identify the Human cell type lamp5 GABAergic cortical interneuron in the Brain with a confidence of 0.814687838 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2116,7 +2116,7 @@
               }
             ],
             "comments": [
-              "The marker set RXRG, THSD7B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023015 in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value)."
+              "The marker set RXRG, THSD7B can identify the Human cell type sncg GABAergic cortical interneuron in the Brain with a confidence of 0.628943702 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2131,7 +2131,7 @@
               }
             ],
             "comments": [
-              "The marker set VIP can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023016 in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value)."
+              "The marker set VIP can identify the Human cell type VIP GABAergic cortical interneuron in the Brain with a confidence of 0.855531344 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2146,7 +2146,7 @@
               }
             ],
             "comments": [
-              "The marker set SST, PLCH1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023017 in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value)."
+              "The marker set SST, PLCH1 can identify the Human cell type sst GABAergic cortical interneuron in the Brain with a confidence of 0.842367005 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2161,7 +2161,7 @@
               }
             ],
             "comments": [
-              "The marker set PVALB, TAC1, MYO5B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023018 in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value)."
+              "The marker set PVALB, TAC1, MYO5B can identify the Human cell type pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.691998764 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2176,7 +2176,7 @@
               }
             ],
             "comments": [
-              "The marker set GPR149, CA8 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023036 in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value)."
+              "The marker set GPR149, CA8 can identify the Human cell type chandelier pvalb GABAergic cortical interneuron in the Brain with a confidence of 0.799748111 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2191,7 +2191,7 @@
               }
             ],
             "comments": [
-              "The marker set CHST8, POU3F1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023041 in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value)."
+              "The marker set CHST8, POU3F1 can identify the Human cell type L5 extratelencephalic projecting glutamatergic cortical neuron in the Brain with a confidence of 0.815891473 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2206,7 +2206,7 @@
               }
             ],
             "comments": [
-              "The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023042 in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value)."
+              "The marker set SEMA5B, ADAMTSL1, SULF1 can identify the Human cell type L6 corticothalamic-projecting glutamatergic cortical neuron in the Brain with a confidence of 0.631898455 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2221,7 +2221,7 @@
               }
             ],
             "comments": [
-              "The marker set CCN2, ROS1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023046 in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value)."
+              "The marker set CCN2, ROS1 can identify the Human cell type L6b glutamatergic neuron of the primary motor cortex in the Brain with a confidence of 0.819940964 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2236,7 +2236,7 @@
               }
             ],
             "comments": [
-              "The marker set NPY can identify the Human cell type http://purl.obolibrary.org/obo/CL_4023121 in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value)."
+              "The marker set NPY can identify the Human cell type sst chodl GABAergic cortical interneuron in the Brain with a confidence of 0.894026187 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2281,7 +2281,7 @@
               }
             ],
             "comments": [
-              "The marker set ONECUT2, COL5A2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030059 in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value)."
+              "The marker set ONECUT2, COL5A2 can identify the Human cell type L2/3 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.670149932 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2296,7 +2296,7 @@
               }
             ],
             "comments": [
-              "The marker set RORB, ST8SIA4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030063 in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value)."
+              "The marker set RORB, ST8SIA4 can identify the Human cell type L4 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.720108696 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2311,7 +2311,7 @@
               }
             ],
             "comments": [
-              "The marker set ARSJ, RORB, KCNK2 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030064 in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value)."
+              "The marker set ARSJ, RORB, KCNK2 can identify the Human cell type L5 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.764261336 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2326,7 +2326,7 @@
               }
             ],
             "comments": [
-              "The marker set LINC00507, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030065 in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value)."
+              "The marker set LINC00507, THEMIS can identify the Human cell type L6 intratelencephalic projecting glutamatergic neuron in the Brain with a confidence of 0.641695703 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2341,7 +2341,7 @@
               }
             ],
             "comments": [
-              "The marker set NPSR1-AS1, TLL1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030067 in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value)."
+              "The marker set NPSR1-AS1, TLL1 can identify the Human cell type L5/6 near-projecting glutamatergic neuron in the Brain with a confidence of 0.899288218 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2356,7 +2356,7 @@
               }
             ],
             "comments": [
-              "The marker set SMYD1, THEMIS can identify the Human cell type http://purl.obolibrary.org/obo/CL_4030068 in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value)."
+              "The marker set SMYD1, THEMIS can identify the Human cell type L6 intratelencephalic projecting Car3 glutamatergic neuron in the Brain with a confidence of 0.877752028 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2401,7 +2401,7 @@
               }
             ],
             "comments": [
-              "The marker set GLYATL2, DMBT1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033023 in the Lung with a confidence of 0.46 (NS-Forest FBeta value)."
+              "The marker set GLYATL2, DMBT1 can identify the Human cell type airway submucosal gland collecting duct epithelial cell in the Lung with a confidence of 0.46 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2446,7 +2446,7 @@
               }
             ],
             "comments": [
-              "The marker set F13A1, STAB1, FCGR2B can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033043 in the Lung with a confidence of 0.46 (NS-Forest FBeta value)."
+              "The marker set F13A1, STAB1, FCGR2B can identify the Human cell type lung interstitial macrophage in the Lung with a confidence of 0.46 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2461,7 +2461,7 @@
               }
             ],
             "comments": [
-              "The marker set TNC, KRT15, SERPINB4 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033048 in the Lung with a confidence of 0.62 (NS-Forest FBeta value)."
+              "The marker set TNC, KRT15, SERPINB4 can identify the Human cell type respiratory suprabasal cell in the Lung with a confidence of 0.62 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2476,7 +2476,7 @@
               }
             ],
             "comments": [
-              "The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033077 in the Lung with a confidence of 0.26 (NS-Forest FBeta value)."
+              "The marker set PCLAF, RRM2, UBE2C, NUSAP1 can identify the Human cell type cycling alveolar macrophage in the Lung with a confidence of 0.26 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2491,7 +2491,7 @@
               }
             ],
             "comments": [
-              "The marker set PEG10, PRC1, TOP2A can identify the Human cell type http://purl.obolibrary.org/obo/CL_4033080 in the Lung with a confidence of 0.61 (NS-Forest FBeta value)."
+              "The marker set PEG10, PRC1, TOP2A can identify the Human cell type cycling pulmonary alveolar type 2 cell in the Lung with a confidence of 0.61 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"
@@ -2506,7 +2506,7 @@
               }
             ],
             "comments": [
-              "The marker set CHST9, LAMP5 can identify the Human cell type http://purl.obolibrary.org/obo/CL_4042013 in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value)."
+              "The marker set CHST9, LAMP5 can identify the Human cell type Lamp5 Lhx6 neuron in the Brain with a confidence of 0.821678322 (NS-Forest FBeta value)."
             ]
           },
           "type": "CLASS"