After installing dependencies using pip install -r requirements.txt, either use the command line tool, e.g.
python emalam.py --structure_filename Example_Input/CEU_IBS_TSI_enhanced_corr_K3_f --out out.txt out.json --fun entropy --min
or (for ADMIXTURE output)
python emalam.py --hatq_filename combined_filtered.3.Q --hatp_filename combined_filtered.3.P --out outEURmax.Q outEURmax.P --fun size --pop 2 --max
or the graphical version
streamlit run EMALAM.py
which is displayed in your browser. Another online version is available under xxx. The code is tested with python 3.12.
which is displayed in your browser. Another online version is available under https://flat-likelihood-in-the-admixture-model-p4vvpwxjdtteu3prahatyj.streamlit.app/.
The choices of the user are described in EMALAM_Manual.pdf.
To depict the results, you can use the Code Create_Figures.py. This plots the estimated IAs as a bar plot as usually done with STURTCURE results.