Manually update katsu's OpenAPI spec to v3.0 data model#239

Merged

mshadbolt merged 17 commits intodevelopfrom feature/manual_schema

Jul 8, 2024

+6,921-2

Commits on Jul 2, 2024

Copy over the schema to a new file
OrdiNeu
committed
Working on a new schema (written manually) to cover changes to v3 of the data model
OrdiNeu
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Remove fields [“lymph_nodes_examined_status”, “lymph_nodes_examined_method”, “number_lymph_nodes_positive”]
OrdiNeu
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Surgery remove the optional field “submitter_specimen_id”
OrdiNeu
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Added required fields [“surgery_reference_database”, “surgery_reference_identifier”]
OrdiNeu
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Remove follow-up optional fields
OrdiNeu
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Add new Systemic Therapy table, remove old chemo/immuno/hormone therapy tables
OrdiNeu
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Add start/end dates to the systemic therapy schemas
OrdiNeu
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Cleanup: Make systemic_therapy_type required, remove submitter_treatment_id from the SampleRegistrations I accidentally added it to
OrdiNeu
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Moved optional fields [“days_per_cycle”, “number_of_cycles”] to Systemic Therapy
OrdiNeu
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Remove line_of_treatment and treatment_setting
OrdiNeu
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Commits on Jul 3, 2024

Fixes from the data portal meeting
OrdiNeu
committed

Commits on Jul 4, 2024

Apply suggestions by @mshadbolt
OrdiNeu
committed

Commits on Jul 5, 2024

Commits on Jul 8, 2024