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datasets_service

Microservice implementation of Datasets from CanDIG v1 for CanDIG v2

Based on CanDIG demo projects: OpenAPI variant service demo, Python Model Service.

Stack

• Connexion for implementing the API
• Bravado-core for Python classes from the spec
• Python 3
• Pytest

Installation

The datasets_service can be installed in a py3.7+ virtual environment:

pip install -r requirements.txt

Running

The service can be started with:

python -m candig_dataset_service

If wanting to run multiple nodes on the same network, create different service configs and specify them at runtime:

python -m candig_dataset_service --host 0.0.0.0 --port 4232 --logfile ./log/newlog.log

Once the service is running, a Swagger UI can be accessed at : /v2/

Testing

Tests can be run with pytest and coverage:

pytest --cov=candig_datasets tests/