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v2.0.0: Katsu UUIDs, completeness stats #16

Merged
merged 22 commits into from
Feb 2, 2024
Merged

v2.0.0: Katsu UUIDs, completeness stats #16

merged 22 commits into from
Feb 2, 2024

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daisieh
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@daisieh daisieh commented Feb 1, 2024 •
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v2.0.0: Katsu UUIDs, completeness stats

  • Katsu UUIDs
  • preliminary completeness stats
  • cohort filtering
  • bug fixes
  • Tagged as a release in this repo
  • Passes integration tests on a development instance
  • Images pushed to Dockerhub

OrdiNeu and others added 22 commits September 15, 2023 13:36
@OrdiNeu
Typo in the page number
973e686
@OrdiNeu
[Misc] Error handling when HTSGet does not respond with a parseable r…
87c5a12 
…esponse
@OrdiNeu
Fix a bug with missing dates of birth?
4d95006
@OrdiNeu
Add cohort filtering
9f35075
@OrdiNeu
Remove docker-compose.yml (Thanks @daisieh !)
c541ceb
@OrdiNeu
Merge pull request #1 from CanDIG/fnguyen/initial-pass
c155777 
DIG-1240: API middleware service to handle queries across federated instances
@OrdiNeu
[wip]
48b29f5
@OrdiNeu
Fix to the age at diagnosis summary stat not working
5da4c56
@OrdiNeu
Merge pull request #4 from CanDIG/fnguyen/age_at_diagnosis_fix
f12540a 
Fix to the age at diagnosis summary stat not working
@OrdiNeu
Fixup completeness query to split out genomic/transcriptome
be5e908
@OrdiNeu
Merge pull request #2 from CanDIG/fnguyen/completeness
5600f6b 
Completeness stats query
@OrdiNeu
Fix an issue where an unknown date of birth or diagnosis would fail
42c5bad
@OrdiNeu
Fix an issue where NoneType keys would crash Flask
934b13a
@OrdiNeu
Fix the page/size being strings instead of ints
8e6c9fa
@OrdiNeu
Merge pull request #5 from CanDIG/fnguyen/date-fix
e15938e 
Fix an issue where an unknown date of birth or diagnosis would fail
@OrdiNeu
Add fixes for things that changed with the Katsu UUID fix
a696e9d
@daisieh
remove libressl-dev
a1bec44
@daisieh
Update query_operations.py
262232e
@OrdiNeu @daisieh
Add fixes for things that changed with the Katsu UUID fix
99edf8c
@OrdiNeu @daisieh
Fix the usage of the candig user
f724417
@daisieh
update uwsgi
fd8fe83
@OrdiNeu @daisieh
Fix for the search page on query
c2b7860
@daisieh daisieh requested a review from OrdiNeu February 1, 2024 19:56
OrdiNeu
OrdiNeu approved these changes Feb 2, 2024
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All of the stable-candidates seem good to go from my end ✔️

@daisieh daisieh merged commit 5af656f into stable Feb 2, 2024
1 check passed
@daisieh daisieh deleted the stable-candidate branch February 2, 2024 18:40
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@OrdiNeu OrdiNeu OrdiNeu approved these changes

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@daisieh @OrdiNeu