v1.5.0

This release introduces

New:

• Log support: All the actions performed by candig-ingest are now logged and stored as log files on the same directory where the ingest was called.
• An --overwrite flag that allows you to overwrite all existing records with identical id. This is especially helpful when you need to pull data from external sources and perform nightly syncs to a candig-server database.
• A -d flag that allows you to write the description of a dataset. Note that this flag only has an effect when the dataset has not been created before. This flag will not overwrite existing dataset's description.
• Allow users to specify localId as the unique identifier of all clinical records other than Patient and Sample table.

Fixes:

• Some code styling issues.
• Some unused import issues.

Updates:

• README.

This update does not introduce any backward-incompatible changes.

v1.5.0-alpha

This release introduces

New:

• An --overwrite flag that allows you to overwrite all existing records with identical id. This is especially helpful when you need to pull data from external sources and perform nightly syncs to a candig-server database.
• A -d flag that allows you to write the description of a dataset. Note that this flag only has an effect when the dataset has not been created before. This flag will not overwrite existing dataset's description.

Fixes:

• Some code styling issues.
• Some unused import issues.

Updates:

• README.

This update does not introduce any backward-incompatible changes.

v1.4.0

This release introduces:

• The updated mock data and tier information to accommodate the newly updated candig-server (appropriate for candig-server>=1.3.0).

v1.3.1

This release introduces:

• Wrap the ingest operations (multiple insertions) within one transaction
• Update readme.rst
• Explicitly prune the mock_data directory to reduce the distribution size.

v1.3.0

This release introduces

• Fixed the problem of pip install under Python 3.6+ environment
• Cleaned up the Readme
• Updated certain syntax to be 2 and 3 compatible.

v1.2.0

This release introduces a number of updates:

• Due to the change of namespace in the candig-server, references to ga4gh.* have been changed to candig.*
• Previously, the installation instructions in Readme has a few outdated commands, urls, etc. These have been replaced with the most up-to-date ones.
• Author email has been added.

v1.1.1

Update the import statements for it to work with the newly-refactored candig-server

v1.1.0

Update the required package from 'ga4gh-server' to 'candig-server'.

v1.0.0

Initial release of the candig-ingest