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CanDIG/candigv2-ingest merging: DIG-1658: Update commandline ingest instructions #667

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merged 15 commits into from
Jul 8, 2024

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PR triggered by update to develop branch on CanDIG/candigv2-ingest. Commit hash: 13562c8d09741179b19dd8f6a0dd225aaba81a2c. PR link: #105

@mshadbolt mshadbolt self-requested a review July 3, 2024 23:06
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automated PR review

mshadbolt and others added 14 commits July 5, 2024 15:06
Co-authored-by: github-actions <[email protected]>
* fix clean up

* update tests

* add 200

* add comment

* update pip

* revert pip

* try pip update

* fix typo

* fix command

* fix command properly

* add #egg

* test names

* fix typos

* update pip

* revert reqs

* fix req

* fix req2

* remove setup upgrade

* remove setuptools upgrade

* delete auth

* update katsu

* update setuptools

* update ingest

* remove default site admin program auth
@mshadbolt mshadbolt merged commit 8cd6cce into develop Jul 8, 2024
2 checks passed
@mshadbolt mshadbolt deleted the CanDIG/candigv2-ingest-9784931830 branch July 8, 2024 18:40
mshadbolt added a commit that referenced this pull request Jul 8, 2024
…nstructions (#667)

* updating submodules

* Update pip

* Update Makefile

* Update requirements.txt

* remove update setuptools

* setuptools first

* Update requirements.txt

* Update example.env

* Update Makefile

* manually update setuptools

* remove setuptools

* Update example.env

* remove setuptools

* updating submodules (#669)

Co-authored-by: github-actions <[email protected]>

* DIG-1663: Implement curator ingest in katsu and batch ingest (#666)

* fix clean up

* update tests

* add 200

* add comment

* update pip

* revert pip

* try pip update

* fix typo

* fix command

* fix command properly

* add #egg

* test names

* fix typos

* update pip

* revert reqs

* fix req

* fix req2

* remove setup upgrade

* remove setuptools upgrade

* delete auth

* update katsu

* update setuptools

* update ingest

* remove default site admin program auth

---------

Co-authored-by: github-actions <[email protected]>
Co-authored-by: Marion <[email protected]>
mshadbolt added a commit that referenced this pull request Jul 8, 2024
…inated (#668)

* updating submodules

* updating submodules (#669)

Co-authored-by: github-actions <[email protected]>

* DIG-1663: Implement curator ingest in katsu and batch ingest (#666)

* fix clean up

* update tests

* add 200

* add comment

* update pip

* revert pip

* try pip update

* fix typo

* fix command

* fix command properly

* add #egg

* test names

* fix typos

* update pip

* revert reqs

* fix req

* fix req2

* remove setup upgrade

* remove setuptools upgrade

* delete auth

* update katsu

* update setuptools

* update ingest

* remove default site admin program auth

* CanDIG/candigv2-ingest merging: DIG-1658: Update commandline ingest instructions (#667)

* updating submodules

* Update pip

* Update Makefile

* Update requirements.txt

* remove update setuptools

* setuptools first

* Update requirements.txt

* Update example.env

* Update Makefile

* manually update setuptools

* remove setuptools

* Update example.env

* remove setuptools

* updating submodules (#669)

Co-authored-by: github-actions <[email protected]>

* DIG-1663: Implement curator ingest in katsu and batch ingest (#666)

* fix clean up

* update tests

* add 200

* add comment

* update pip

* revert pip

* try pip update

* fix typo

* fix command

* fix command properly

* add #egg

* test names

* fix typos

* update pip

* revert reqs

* fix req

* fix req2

* remove setup upgrade

* remove setuptools upgrade

* delete auth

* update katsu

* update setuptools

* update ingest

* remove default site admin program auth

---------

Co-authored-by: github-actions <[email protected]>
Co-authored-by: Marion <[email protected]>

---------

Co-authored-by: github-actions <[email protected]>
Co-authored-by: Marion <[email protected]>
mshadbolt added a commit that referenced this pull request Jul 8, 2024
…nstructions (#667)

* updating submodules

* Update pip

* Update Makefile

* Update requirements.txt

* remove update setuptools

* setuptools first

* Update requirements.txt

* Update example.env

* Update Makefile

* manually update setuptools

* remove setuptools

* Update example.env

* remove setuptools

* updating submodules (#669)

Co-authored-by: github-actions <[email protected]>

* DIG-1663: Implement curator ingest in katsu and batch ingest (#666)

* fix clean up

* update tests

* add 200

* add comment

* update pip

* revert pip

* try pip update

* fix typo

* fix command

* fix command properly

* add #egg

* test names

* fix typos

* update pip

* revert reqs

* fix req

* fix req2

* remove setup upgrade

* remove setuptools upgrade

* delete auth

* update katsu

* update setuptools

* update ingest

* remove default site admin program auth

---------

Co-authored-by: github-actions <[email protected]>
Co-authored-by: Marion <[email protected]>
mshadbolt added a commit that referenced this pull request Jul 8, 2024
…inated (#668)

* updating submodules

* updating submodules (#669)

Co-authored-by: github-actions <[email protected]>

* DIG-1663: Implement curator ingest in katsu and batch ingest (#666)

* fix clean up

* update tests

* add 200

* add comment

* update pip

* revert pip

* try pip update

* fix typo

* fix command

* fix command properly

* add #egg

* test names

* fix typos

* update pip

* revert reqs

* fix req

* fix req2

* remove setup upgrade

* remove setuptools upgrade

* delete auth

* update katsu

* update setuptools

* update ingest

* remove default site admin program auth

* CanDIG/candigv2-ingest merging: DIG-1658: Update commandline ingest instructions (#667)

* updating submodules

* Update pip

* Update Makefile

* Update requirements.txt

* remove update setuptools

* setuptools first

* Update requirements.txt

* Update example.env

* Update Makefile

* manually update setuptools

* remove setuptools

* Update example.env

* remove setuptools

* updating submodules (#669)

Co-authored-by: github-actions <[email protected]>

* DIG-1663: Implement curator ingest in katsu and batch ingest (#666)

* fix clean up

* update tests

* add 200

* add comment

* update pip

* revert pip

* try pip update

* fix typo

* fix command

* fix command properly

* add #egg

* test names

* fix typos

* update pip

* revert reqs

* fix req

* fix req2

* remove setup upgrade

* remove setuptools upgrade

* delete auth

* update katsu

* update setuptools

* update ingest

* remove default site admin program auth

---------

Co-authored-by: github-actions <[email protected]>
Co-authored-by: Marion <[email protected]>

---------

Co-authored-by: github-actions <[email protected]>
Co-authored-by: Marion <[email protected]>
mshadbolt added a commit that referenced this pull request Jul 8, 2024
… bugs, and styling changes (#670)

* updating submodules

* DIG-1663: Implement curator ingest in katsu and batch ingest (#666)

* fix clean up

* update tests

* add 200

* add comment

* update pip

* revert pip

* try pip update

* fix typo

* fix command

* fix command properly

* add #egg

* test names

* fix typos

* update pip

* revert reqs

* fix req

* fix req2

* remove setup upgrade

* remove setuptools upgrade

* delete auth

* update katsu

* update setuptools

* update ingest

* remove default site admin program auth

* CanDIG/candigv2-ingest merging: DIG-1658: Update commandline ingest instructions (#667)

* updating submodules

* Update pip

* Update Makefile

* Update requirements.txt

* remove update setuptools

* setuptools first

* Update requirements.txt

* Update example.env

* Update Makefile

* manually update setuptools

* remove setuptools

* Update example.env

* remove setuptools

* updating submodules (#669)

Co-authored-by: github-actions <[email protected]>

* DIG-1663: Implement curator ingest in katsu and batch ingest (#666)

* fix clean up

* update tests

* add 200

* add comment

* update pip

* revert pip

* try pip update

* fix typo

* fix command

* fix command properly

* add #egg

* test names

* fix typos

* update pip

* revert reqs

* fix req

* fix req2

* remove setup upgrade

* remove setuptools upgrade

* delete auth

* update katsu

* update setuptools

* update ingest

* remove default site admin program auth

---------

Co-authored-by: github-actions <[email protected]>
Co-authored-by: Marion <[email protected]>

* CanDIG/candigv2-query merging: Bugfix: sidebar cohort style pipeDeliminated (#668)

* updating submodules

* updating submodules (#669)

Co-authored-by: github-actions <[email protected]>

* DIG-1663: Implement curator ingest in katsu and batch ingest (#666)

* fix clean up

* update tests

* add 200

* add comment

* update pip

* revert pip

* try pip update

* fix typo

* fix command

* fix command properly

* add #egg

* test names

* fix typos

* update pip

* revert reqs

* fix req

* fix req2

* remove setup upgrade

* remove setuptools upgrade

* delete auth

* update katsu

* update setuptools

* update ingest

* remove default site admin program auth

* CanDIG/candigv2-ingest merging: DIG-1658: Update commandline ingest instructions (#667)

* updating submodules

* Update pip

* Update Makefile

* Update requirements.txt

* remove update setuptools

* setuptools first

* Update requirements.txt

* Update example.env

* Update Makefile

* manually update setuptools

* remove setuptools

* Update example.env

* remove setuptools

* updating submodules (#669)

Co-authored-by: github-actions <[email protected]>

* DIG-1663: Implement curator ingest in katsu and batch ingest (#666)

* fix clean up

* update tests

* add 200

* add comment

* update pip

* revert pip

* try pip update

* fix typo

* fix command

* fix command properly

* add #egg

* test names

* fix typos

* update pip

* revert reqs

* fix req

* fix req2

* remove setup upgrade

* remove setuptools upgrade

* delete auth

* update katsu

* update setuptools

* update ingest

* remove default site admin program auth

---------

Co-authored-by: github-actions <[email protected]>
Co-authored-by: Marion <[email protected]>

---------

Co-authored-by: github-actions <[email protected]>
Co-authored-by: Marion <[email protected]>

---------

Co-authored-by: github-actions <[email protected]>
Co-authored-by: Marion <[email protected]>
daisieh pushed a commit that referenced this pull request Jul 16, 2024
…nstructions (#667)

* updating submodules

* Update pip

* Update Makefile

* Update requirements.txt

* remove update setuptools

* setuptools first

* Update requirements.txt

* Update example.env

* Update Makefile

* manually update setuptools

* remove setuptools

* Update example.env

* remove setuptools

* updating submodules (#669)

Co-authored-by: github-actions <[email protected]>

* DIG-1663: Implement curator ingest in katsu and batch ingest (#666)

* fix clean up

* update tests

* add 200

* add comment

* update pip

* revert pip

* try pip update

* fix typo

* fix command

* fix command properly

* add #egg

* test names

* fix typos

* update pip

* revert reqs

* fix req

* fix req2

* remove setup upgrade

* remove setuptools upgrade

* delete auth

* update katsu

* update setuptools

* update ingest

* remove default site admin program auth

---------

Co-authored-by: github-actions <[email protected]>
Co-authored-by: Marion <[email protected]>
daisieh pushed a commit that referenced this pull request Oct 4, 2024
…nstructions (#667)

* updating submodules

* Update pip

* Update Makefile

* Update requirements.txt

* remove update setuptools

* setuptools first

* Update requirements.txt

* Update example.env

* Update Makefile

* manually update setuptools

* remove setuptools

* Update example.env

* remove setuptools

* updating submodules (#669)

Co-authored-by: github-actions <[email protected]>

* DIG-1663: Implement curator ingest in katsu and batch ingest (#666)

* fix clean up

* update tests

* add 200

* add comment

* update pip

* revert pip

* try pip update

* fix typo

* fix command

* fix command properly

* add #egg

* test names

* fix typos

* update pip

* revert reqs

* fix req

* fix req2

* remove setup upgrade

* remove setuptools upgrade

* delete auth

* update katsu

* update setuptools

* update ingest

* remove default site admin program auth

---------

Co-authored-by: github-actions <[email protected]>
Co-authored-by: Marion <[email protected]>
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2 participants