Cleaned up basic-infection. Fixes #239.#274

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RobertJacobsonCDC wants to merge 2 commits intomainfrom RobertJacobsonCDC_239_clean_up_basic_infection

Commits on Mar 11, 2025

Moved disease_model from the docs to examples and made a symlink in the docs.
RobertJacobsonCDC
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Clippy is broken on benchmarks, especially their test modules. This commit adds enough allow annotations to get them to pass.
RobertJacobsonCDC
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