Code

reruns and vm setup#45

Code

Merged

hector-baez merged 29 commits intomasterCALeDNA/crux:masterfrom developCALeDNA/crux:developCopy head branch name to clipboardDec 5, 2023

+762-978

Commits

Commits on Nov 13, 2023

• add bucket var

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  e107b21

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Commits on Nov 14, 2023

• deduplicate asv

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  d1ccfcc

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• catch empty folders

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  68561a5

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Commits on Nov 17, 2023

• add new files to checksum file

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  3ba46c7

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Commits on Nov 18, 2023

• removed hardcoded paired dir

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  abd6435

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• add unpaired rerun

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  13f5480

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• fix suffix

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  f33b080

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• move vm setup to t-rex-monitor

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Commits on Nov 19, 2023

• fix paths

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  616f869

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• rename var

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  e3f6329

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• rewrite line in awk

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  9d2031d

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Commits on Nov 20, 2023

• add echo debug statements

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  ede462e

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Commits on Nov 21, 2023

• fix asv deduplicate step

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  0f38dbd

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Commits on Nov 28, 2023

• add deduplicated rows to old asv's

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  a45069b

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Commits on Nov 29, 2023

• change w to r

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  7522940

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• add padding to asv files

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  e2b9b19

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• change paste to cat

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  9538e58

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• update shutil move

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  0c62d1f

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• modify asv in python

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  befe1ce

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• get first value in dict

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  8944d57

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• get len of arr

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  74147f7

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Commits on Nov 30, 2023

• convert int to str

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  4a49504

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• fix asv formatting

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  02a0cb5

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• calc seq length

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  97d00da

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Commits on Dec 4, 2023

• mv qcassign to flask repo

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  8c57b18

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• fix rc double processing

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  e8b605d

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• copy files for rc

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  78a7eaf

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Commits on Dec 5, 2023

• check for remaining blast jobs

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  8c7ab0f

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• modify ac parameters

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  bae2a58

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