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flair correct guessing the format of junction input is confusing and brittle #381

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diekhans opened this issue Nov 10, 2024 · 0 comments
Open

flair correct guessing the format of junction input is confusing and brittle #381

diekhans opened this issue Nov 10, 2024 · 0 comments
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command line Issues related to command line mod; correct

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Correct—the j option attempts to guess whether the input is a BED or a star junctions file. This is not clearly documented, confusing, and fragile, making it harder to check for errors.
@diekhans diekhans added the command line Issues related to command line label Nov 10, 2024
@diekhans diekhans mentioned this issue Nov 10, 2024
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@diekhans diekhans self-assigned this Jan 21, 2025
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command line Issues related to command line mod; correct
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