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@Biomedical-Imaging-Group

Biomedical Imaging Group

The BIG pursues research on the development of new algorithms and mathematical tools for the advanced processing of medical and biological images

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  1. DeepSplines DeepSplines Public

    A learnable linear spline module (PyTorch)

    Python 1

  2. GlobalBioIm GlobalBioIm Public

    A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

    MATLAB 83 36

  3. DeconvolutionLab2 DeconvolutionLab2 Public

    Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

    Java 55 15

  4. Generating-Sparse-Processes Generating-Sparse-Processes Public

    Jupyter Notebook 1 1

Repositories

Showing 10 of 23 repositories
  • psf_generator Public

    PSF Generator: a PyTorch-based library to simulate point spread functions for microscopes.

    Biomedical-Imaging-Group/psf_generator’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Feb 27, 2025
  • IPLABs-distribution-2024 Public
    Biomedical-Imaging-Group/IPLABs-distribution-2024’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 20, 2025
  • napari-psfgenerator Public
    Biomedical-Imaging-Group/napari-psfgenerator’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 10, 2025
  • perturbative-fpm Public

    Code accompanying "Perturbative Fourier Ptychographic Microscopy for Fast Quantitative Phase Imaging".

    Biomedical-Imaging-Group/perturbative-fpm’s past year of commit activity
    1 MIT 0 0 0 Updated Jan 11, 2025
  • GlobalBioIm Public

    A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

    Biomedical-Imaging-Group/GlobalBioIm’s past year of commit activity
    MATLAB 83 GPL-3.0 36 8 (1 issue needs help) 0 Updated Nov 15, 2024
  • OrientationJ Public

    ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection

    Biomedical-Imaging-Group/OrientationJ’s past year of commit activity
    Java 25 GPL-3.0 8 5 0 Updated Oct 21, 2024
  • EDF-Extended-Depth-of-Field Public

    An ImageJ plugin for stack focusing. Implementation of several algorithms form max-variance to max-wavelets.

    Biomedical-Imaging-Group/EDF-Extended-Depth-of-Field’s past year of commit activity
    Java 12 GPL-3.0 4 0 0 Updated Oct 3, 2024
  • Biomedical-Imaging-Group.github.io Public
    Biomedical-Imaging-Group/Biomedical-Imaging-Group.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 30, 2024
  • DeconvolutionLab2.github.io Public

    DeconvolutionLab2

    Biomedical-Imaging-Group/DeconvolutionLab2.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Sep 30, 2024
  • DeepSplines Public

    A learnable linear spline module (PyTorch)

    Biomedical-Imaging-Group/DeepSplines’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 6, 2024
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