Create Brain Image Library.md #9
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Brain Image Library.md
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| * Host an image portal to allow rapid access to images from these datasets. | ||
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| ## In-scope |
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Does this include pipelines for conversion to standardized formats? This is something BIL has expressed interest in doing
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Yes, this is address by the last item under In-scope.
Brain Image Library.md
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| * Host an image portal to allow rapid access to images from these datasets. | ||
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| ## In-scope | ||
| * Accept confocal microscopy image datasets from BICCN or other |
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In addition to confocal microscopy data, also other image data include light microscopy, fluorescence microscopy, 3D microscopy
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Maybe mention the possibility of including other modalities in the future?
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We have removed "confocal" everywhere in our charter, and just say "microscopy".
Brain Image Library.md
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| * Host an image portal to allow rapid access to images from these datasets. | ||
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| ## In-scope |
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For consideration:
To support in-context image browsing within the BCDC Cell Registry and other applications through the provision of image services to serve tiles and region of interests from the high resolution images.
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Greg says yes there will be an image server.
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Added "APIs" to last item under In-scope. We don't want to get into details about serving tiles in this document.
Extensive rewrite by Alex Ropelewski.
Various formatting and punctuation mods.
formatting tweaks
Added Derek to Roles list.
Brain Image Library.md
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| ## Objectives | ||
| * Permanent repository for high-quality brain microscopy datasets | ||
| – Brain images of mouse, rat, human, other mammals and model organisms | ||
| – Targeted experiments, including connectivity between cells and |
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In some cases, like spatial transcriptomics data, repository may hold processed files instead of raw image files (although raw data is preferable). Should we clarify that in scope is hosting of derivative files from the image data? Morphology swc files is a similar example.
Oh, I see that is down below in the "in-scope"
Create draft charter.