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Alternative method for estimating insert size distribution #8

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dfornika opened this issue Dec 1, 2023 · 0 comments · Fixed by #9

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dfornika commented Dec 1, 2023

We seem to be getting unrealistic estimates from qualimap bamqc for the metrics:

mean_insert_size
stdev_insert_size

...though the median_insert_size appears to be reasonable.

Evaluate an alternative method for estimating the insert size distribution (samtools stats for example)

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dfornika mentioned this issue

Alt insert size metrics #9

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dfornika closed this as completed in #9

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