Upgrade to zarr-python 3 #7
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robertschweizer
approved these changes
Feb 4, 2025
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This is essentially a re-write of the plugin that makes it compatible with zarr-python 3 and simplifies it somewhat. I had to drop the tifffile backend (for now) because tifffile is not yet compatible with this version, but I added two new backends to compensate, openslide and wsidicom, next to to the updated rasterio backend. The main classes are
OpenSlideStore,RasterioStoreandWSIDicomStore.As a new feature, in addition to the support of DICOM images, I added support for ICC color profiles (for both the openslide and wsidicom backends, see the
ColorTransformclass).This also replaces poetry with uv for dependency management.