chore: release v0.9.0

[armavicas-release-app]

🤖 New release

• rebop: 0.8.3 -> 0.9.0 (⚠️ API breaking changes)

⚠️ rebop breaking changes

--- failure enum_missing: pub enum removed or renamed ---

Description:
A publicly-visible enum cannot be imported by its prior path. A `pub use` may have been removed, or the enum itself may have been renamed or removed entirely.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#item-remove
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.38.0/src/lints/enum_missing.ron

Failed in:
  enum rebop::gillespie::Expr, previously in file /tmp/.tmpE2zeRS/rebop/src/gillespie.rs:9

--- failure method_parameter_count_changed: pub method parameter count changed ---

Description:
A publicly-visible method now takes a different number of parameters.
        ref: https://doc.rust-lang.org/cargo/reference/semver.html#fn-change-arity
       impl: https://github.com/obi1kenobi/cargo-semver-checks/tree/v0.38.0/src/lints/method_parameter_count_changed.ron

Failed in:
  rebop::gillespie::Gillespie::new now takes 2 parameters instead of 1, in /tmp/.tmpZZA2qa/rebop/src/gillespie.rs:148
  rebop::gillespie::Gillespie::new_with_seed now takes 3 parameters instead of 2, in /tmp/.tmpZZA2qa/rebop/src/gillespie.rs:157

Changelog

0.9.0 - 2025-01-22

Added

• allow giving arbitrary rates from Python
• add an auto (None) option for sparsity
• fix and expose sparsity

Changed

• changed seed argument to rng to conform to SPEC-7

Dependencies

• upgrade pyo3 to 0.23

Documentation

• organize badges on README
• add badges for the PyPI version and RTD docs
• fix name of optional dependencies in rtd config
• add rust tooling to the readthedocs environment
• fix readthedocs install
• add a readthedocs page
• document the Python interface

Fixed

• fix arbitrary rates overwriting previous definitions
• fix benches with a sparsity argument

Miscellaneous

• check all targets in pre-commit
• add tests for exprs
• robustify Gillespie tests
• Add tests for gillespie::Jump
• add tests for gillespie::Rate
• add tests for gillespie::Rate
• fix pixi build task
• update CI
• update pre-commit hooks
• upgrade dependencies
• cancel CI on repeated PRs
• enable dependabot update grouping
• use a markdown formatter
• add custom pre-commit CI message
• enable mypy
• update pre-commit hooks
• make ruff show fixes
• enable docstring format by ruff
• add pytest config options

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This PR was generated with release-plz.