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update JOSS paper
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Aminsinichi committed Mar 26, 2024
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82 changes: 82 additions & 0 deletions paper/paper.bib
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Expand Up @@ -171,6 +171,15 @@ @inproceedings{seabold2010statsmodels
year={2010},
}

# pyHRV
@inproceedings{Gomes2019,
author = {Gomes, Pedro and Margaritoff, Petra and Silva, Hugo},
booktitle = {Proc. Int'l Conf. on Electrical, Electronic and Computing Engineering (IcETRAN)},
pages = {822-828},
title = {{pyHRV: Development and evaluation of an open-source python toolbox for heart rate variability (HRV)}},
year = {2019}
}


# papers
@article{hill_ethnic_2015,
Expand Down Expand Up @@ -322,3 +331,76 @@ @article{bent_investigating_2020
Publisher: Nature Publishing Group},
pages = {1--9},
}

@article{BRUTON200094,
title = {Reliability: What is it, and how is it measured?},
journal = {Physiotherapy},
volume = {86},
number = {2},
pages = {94-99},
year = {2000},
issn = {0031-9406},
doi = {https://doi.org/10.1016/S0031-9406(05)61211-4},
url = {https://www.sciencedirect.com/science/article/pii/S0031940605612114},
author = {Anne Bruton and Joy H Conway and Stephen T Holgate},
keywords = {Reliability, measurement, quantitative measures, statistical method},
abstract = {Summary
Therapists regularly perform various measurements. How reliable these measurements are in themselves, and how reliable therapists are in using them, is clearly essential knowledge to help clinicians decide whether or not a particular measurement is of any value. The aim of this paper is to explain the nature of reliability, and to describe some of the commonly used estimates that attempt to quantify it. An understanding of reliability, and how it is estimated, will help therapists to make sense of their own clinical findings, and to interpret published studies. Although reliability is generally perceived as desirable, there is no firm definition as to the level of reliability required to reach clinical acceptability. As with hypothesis testing, statistically significant levels of reliability may not translate into clinically acceptable levels, so that some authors' claims about reliability may need to be interpreted with caution. Reliability is generally population specific, so that caution is also advised in making comparisons between studies. The current consensus is that no single estimate is sufficient to provide the full picture about reliability, and that different types of estimate should be used together.}
}

@article{d66d4fe8-8a27-315e-bbce-f72f450c6450,
ISSN = {00390526, 14679884},
URL = {http://www.jstor.org/stable/2987937},
abstract = {Methods of analysis used in the comparison of two methods of measurement are reviewed. The use of correlation, regression and the difference between means is criticized. A simple parametric approach is proposed based on analysis of variance and simple graphical methods.},
author = {D. G. Altman and J. M. Bland},
journal = {Journal of the Royal Statistical Society. Series D (The Statistician)},
number = {3},
pages = {307--317},
publisher = {[Royal Statistical Society, Wiley]},
title = {Measurement in Medicine: The Analysis of Method Comparison Studies},
urldate = {2024-03-26},
volume = {32},
year = {1983}
}

@article{MAKRIDAKIS1993527,
title = {Accuracy measures: theoretical and practical concerns},
journal = {International Journal of Forecasting},
volume = {9},
number = {4},
pages = {527-529},
year = {1993},
issn = {0169-2070},
doi = {https://doi.org/10.1016/0169-2070(93)90079-3},
url = {https://www.sciencedirect.com/science/article/pii/0169207093900793},
author = {Spyros Makridakis}
}

@article{Haghayegh_2020,
doi = {10.1088/1361-6579/ab86d6},
url = {https://dx.doi.org/10.1088/1361-6579/ab86d6},
year = {2020},
month = {jun},
publisher = {IOP Publishing},
volume = {41},
number = {5},
pages = {055012},
author = {Shahab Haghayegh and Hyeon-Ah Kang and Sepideh Khoshnevis and Michael H Smolensky and Kenneth R Diller},
title = {A comprehensive guideline for Bland–Altman and intra class correlation calculations to properly compare two methods of measurement and interpret findings},
journal = {Physiological Measurement},
abstract = {The rapid emergence of new measurement instruments and methods requires personnel and researchers of different disciplines to know the correct statistical methods to utilize to compare their performance with reference ones and properly interpret findings. We discuss the often-made mistake of applying the inappropriate correlation and regression statistical approaches to compare methods and then explain the concepts of agreement and reliability. Then, we introduce the intraclass correlation as a measure of inter-rater reliability, and the Bland–Altman plot as a measure of agreement, and we provide formulae to calculate them along with illustrative examples for different types of study designs, specifically single measurement per subject, repeated measurement while the true value is constant, and repeated measurement when the true value is not constant. We emphasize the requirement to validate the assumptions of these statistical approaches, and also how to deal with violations and provide formulae on how to calculate the confidence interval for estimated values of agreement and intraclass correlation. Finally, we explain how to interpret and report the findings of these statistical analyses.}
}

@article{Makowski2021neurokit,
author = {Dominique Makowski and Tam Pham and Zen J. Lau and Jan C. Brammer and Fran{\c{c}}ois Lespinasse and Hung Pham and Christopher Schölzel and S. H. Annabel Chen},
title = {{NeuroKit}2: A Python toolbox for neurophysiological signal processing},
journal = {Behavior Research Methods},
volume = {53},
number = {4},
pages = {1689--1696},
publisher = {Springer Science and Business Media {LLC}},
doi = {10.3758/s13428-020-01516-y},
url = {https://doi.org/10.3758%2Fs13428-020-01516-y},
year = 2021,
month = {feb}
}
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