build

add early install of numpy and cython #4


	name: build
	on:
	push:
	branches: [ "main", "test_build_env"]
	pull_request:
	branches: [ "main", "test_build_env"]

	workflow_dispatch:

	jobs:
	build:
	runs-on:
	group: LargerInstance

	env:
	DANDI_API_KEY: ${{ secrets.DANDI_API_KEY }}
	TESTING: True

	steps:
	- uses: actions/checkout@v3
	with:
	fetch-depth: 0
	ref: main

	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: "3.10"

	- name: Upgrading pip
	run: pip install --upgrade pip

	- name: Install deps
	run: pip install numpy cython

	- name: Installing package
	run: pip install -e .

	- name: Printing environment
	run: pip freeze

	# - name: Installing packages again (this prevents a weird error)
	# run: pip install -r requirements.txt

	# - name: Printing environment
	# run: pip freeze

	- name: Installing build dependencies
	run: \|
	pip install markupsafe==2.0.1
	pip install jupyter==1.0.0
	pip install -U jupyter-book==1.0.0
	pip install nbmake==1.5.3
	pip install pytest-xdist==3.5.0

	- name: Printing environment
	run: pip freeze

	- name: Testing Embargoed Notebooks
	run: pytest --nbmake --nbmake-timeout=8000 -n=auto "./docs/embargoed/cell_matching.ipynb"

	- name: Printing log
	run: git status

	- name: Printing shortlog
	run: git log \| git shortlog -sn

	- name: Build Jupyter book
	run: \|
	jupyter-book clean ./docs
	jupyter-book build ./docs

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