Code

Poetry dependency manager#2704

Code

Closed

mikejhuang wants to merge 55 commits intomasterAllenInstitute/AllenSDK:masterfrom poetry_dependency_managerAllenInstitute/AllenSDK:poetry_dependency_managerCopy head branch name to clipboard

+28,015-22,262

Commits

Commits on Aug 2, 2023

• Add new nwb writers with metadata comparison.

  Show description for cf66209
  

  morriscb

  authored and

  mikejhuang

  committed
  cf66209

  Copy full SHA for cf66209

• Add session_type and project code parsing.

  Show description for cd50b38
  

  morriscb

  authored and

  mikejhuang

  committed
  cd50b38

  Copy full SHA for cd50b38

• isort+black

  

  morriscb

  authored and

  mikejhuang

  committed
  64c23f4

  Copy full SHA for 64c23f4

• Add stimulus_block_name column to stimulus_presentations.

  Show description for 17f3d0e
  

  morriscb

  authored and

  mikejhuang

  committed
  17f3d0e

  Copy full SHA for 17f3d0e

• Add trials_id creation to BehaviorSession.from_lims

  Show description for c3e7928
  

  morriscb

  authored and

  mikejhuang

  committed
  c3e7928

  Copy full SHA for c3e7928

• isort+black

  

  morriscb

  authored and

  mikejhuang

  committed
  e9f1a8d

  Copy full SHA for e9f1a8d

• Changes to support python 3.10

  Show description for 1c19b40
  

  aamster

  authored and

  mikejhuang

  committed
  1c19b40

  Copy full SHA for 1c19b40

• update setup

  

  aamster

  authored and

  mikejhuang

  committed
  db70ea2

  Copy full SHA for db70ea2

• remove upper bound on matplotlib

  

  aamster

  authored and

  mikejhuang

  committed
  d0ceb73

  Copy full SHA for d0ceb73

• Revert "allow manually running nightly"

  Show description for ce177cf
  

  aamster

  authored and

  mikejhuang

  committed
  ce177cf

  Copy full SHA for ce177cf

• set seed for df.sample

  mikejhuang

  committed
  2896364

  Copy full SHA for 2896364

• Update notebooks

  mikejhuang

  committed
  5b777cd

  Copy full SHA for 5b777cd

• Clean up NWB creation code.

  Show description for 7f13c53
  

  morriscb

  authored and

  mikejhuang

  committed
  7f13c53

  Copy full SHA for 7f13c53

• isort+black

  

  morriscb

  authored and

  mikejhuang

  committed
  d46c6be

  Copy full SHA for d46c6be

• read session_type from db

  Show description for 4407881
  

  aamster

  authored and

  mikejhuang

  committed
  4407881

  Copy full SHA for 4407881

• remove logic that read session_type and daq from vbn code path

  

  aamster

  authored and

  mikejhuang

  committed
  8392556

  Copy full SHA for 8392556

• read date of acquisition from lims

  

  aamster

  authored and

  mikejhuang

  committed
  550cef0

  Copy full SHA for 550cef0

• remove unused import

  

  aamster

  authored and

  mikejhuang

  committed
  9501ffc

  Copy full SHA for 9501ffc

• lint

  

  aamster

  authored and

  mikejhuang

  committed
  f82959c

  Copy full SHA for f82959c

• ignore column order in test

  

  aamster

  authored and

  mikejhuang

  committed
  c5b2ae4

  Copy full SHA for c5b2ae4

• revert left join on ophys containers

  

  aamster

  authored and

  mikejhuang

  committed
  9fd61ce

  Copy full SHA for 9fd61ce

• abstracts out logic to merge columns

  

  aamster

  authored and

  mikejhuang

  committed
  54db7f6

  Copy full SHA for 54db7f6

• fix bug due to duplicated project_code logic

  

  aamster

  authored and

  mikejhuang

  committed
  5827255

  Copy full SHA for 5827255

• Update behavior metadata writer.

  Show description for 6f67138
  

  morriscb

  authored and

  mikejhuang

  committed
  6f67138

  Copy full SHA for 6f67138

• flip input axes to _gaussian_function_2d to conform to np.array

  mikejhuang

  committed
  ebe28eb

  Copy full SHA for ebe28eb

• lint

  mikejhuang

  committed
  a997b74

  Copy full SHA for a997b74

• isort+black+manual comment line length editing receptive_field_mapping

  Show description for 79c6924
  mikejhuang

  committed
  79c6924

  Copy full SHA for 79c6924

• Updating images to use PIL Image

  

  Ahad-Allen

  authored and

  mikejhuang

  committed
  c30f325

  Copy full SHA for c30f325

• Add negative running speed check.

  Show description for d198cfc
  

  morriscb

  authored and

  mikejhuang

  committed
  d198cfc

  Copy full SHA for d198cfc

• Clean up for VBO update release

  Show description for 967ac00
  

  morriscb

  authored and

  mikejhuang

  committed
  967ac00

  Copy full SHA for 967ac00

• Implement fixes to presentations table.

  Show description for 49582e6
  

  morriscb

  authored and

  mikejhuang

  committed
  49582e6

  Copy full SHA for 49582e6

• Add new information to templates data.

  

  morriscb

  authored and

  mikejhuang

  committed
  c6570bd

  Copy full SHA for c6570bd

• Add stimulus template for movies.

  Show description for 79ce22c
  

  morriscb

  authored and

  mikejhuang

  committed
  79ce22c

  Copy full SHA for 79ce22c

• load probe lfp metadata without needing to load lfp

  

  aamster

  authored and

  mikejhuang

  committed
  d161f41

  Copy full SHA for d161f41

• Add removal of omitted stimulus to presentations.

  Show description for 5175183
  

  morriscb

  authored and

  mikejhuang

  committed
  5175183

  Copy full SHA for 5175183

• Unpeg statsmodels

  Show description for 1e59556
  

  morriscb

  authored and

  mikejhuang

  committed
  1e59556

  Copy full SHA for 1e59556

• Check for non-zero df length.

  Show description for d6d254e
  

  morriscb

  authored and

  mikejhuang

  committed
  d6d254e

  Copy full SHA for d6d254e

• isort+black

  

  morriscb

  authored and

  mikejhuang

  committed
  c86dabf

  Copy full SHA for c86dabf

• set structure_id to primary_injection_structure instead of first structure in list

  mikejhuang

  committed
  e3ef243

  Copy full SHA for e3ef243

• Add removal of omitted stimulus to presentations.

  Show description for 2de5752
  

  morriscb

  authored and

  mikejhuang

  committed
  2de5752

  Copy full SHA for 2de5752

• Unpeg statsmodels

  Show description for 3c13e21
  

  morriscb

  authored and

  mikejhuang

  committed
  3c13e21

  Copy full SHA for 3c13e21

• Check for non-zero df length.

  Show description for 90c0e8d
  

  morriscb

  authored and

  mikejhuang

  committed
  90c0e8d

  Copy full SHA for 90c0e8d

• isort+black

  

  morriscb

  authored and

  mikejhuang

  committed
  c0db510

  Copy full SHA for c0db510

• lint

  mikejhuang

  committed
  ed2c98a

  Copy full SHA for ed2c98a

• lint

  mikejhuang

  committed
  ed71f8e

  Copy full SHA for ed71f8e

• poetry dependency setup for py3.8 to 3.10

  mikejhuang

  committed
  fd12319

  Copy full SHA for fd12319

• fix deprecated np.bool

  mikejhuang

  committed
  3675589

  Copy full SHA for 3675589

• fix Int64Index deprecation and explicit requirement for regex boolean on str.replace

  mikejhuang

  committed
  2e1a63f

  Copy full SHA for 2e1a63f

• fix pandas reindex change

  mikejhuang

  committed
  83d771f

  Copy full SHA for 83d771f

• change check_less_precise to rtol in assert_series_equal

  mikejhuang

  committed
  b04777b

  Copy full SHA for b04777b

• fix attempt to reindex a MultiIndex

  mikejhuang

  committed
  c3a72ab

  Copy full SHA for c3a72ab

• fix deprecated np.float and np.int

  mikejhuang

  committed
  b59b39b

  Copy full SHA for b59b39b

• downgrade pandas=1.53, hdmf=3.4.7, pynwb=2.3.3

  mikejhuang

  committed
  45949e5

  Copy full SHA for 45949e5

• add python 3.11 to github actions

  mikejhuang

  committed
  8aa90c9

  Copy full SHA for 8aa90c9

• add Python 3.11 in setup.py

  mikejhuang

  committed
  3fefc44

  Copy full SHA for 3fefc44