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Alepidoptera7/README.md

Hello Biological World,

I'm Quin Lamothe, a bioinformatic engineer. My efforts involve bioinformatic machine learning as may be applied to laboratory processes, clinical discovery, and therapeutic design.

I'll soon finish a Masters of Engineering at UC Berkeley in Bioengineering - Bioinformatics and Computational Biology, with a Dean's Scholarship. I hold bachelor's degrees in Biomolecular Engineering and Bioinformatics, and Computational Mathematics from UCSC, with honors.

Please, inspect my work, such that we may converge on truth together.

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  1. 3D-Predictive-Cellular-Automata- 3D-Predictive-Cellular-Automata- Public

    Computational Mathematics Sr. Seminar project. Cellular automaton to predict tumor growth. Comparable to a 3-d Conway's Game of Life.

    Python 1

  2. k-means-to-BLAST- k-means-to-BLAST- Public

    Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.

    Python

  3. ssDNA-Aptamer-Prediction- ssDNA-Aptamer-Prediction- Public

    BMEB Thesis project which develops ssDNA aptamer sequences from probabilistic data per provided protein epitope.

    Python 1

  4. cell_image_cnn cell_image_cnn Public

    CNN for classifying cell types by image.

    Jupyter Notebook

  5. GANs- GANs- Public

    Generative Adversarial Network Scripts

    Jupyter Notebook

  6. spring_tension_classifiers spring_tension_classifiers Public

    Classification architectures for representing scRNA data through spring tension modeling.

    Jupyter Notebook