Argument list too long, scratch, chmod 777

[EMBL-Structures]

Hi all,

relion/src/exp_model.cpp

Line 786 in c3b3364

std::string command = " chmod 777 " + fn_scratch + "particle*";

"ERROR in executing chmod 777 /tmp/33776414/relion_volatile/particle*" occured for a data set with 58000 particles.
We fixed the issue in our installation by using chmod -R instead:
std::string command = " chmod -R 777 " + fn_scratch + "/";

Cheers,
Thomas

[biochem-fan]

Thanks for your report. Is this for 3D particles (i.e. subtomogram averaging)?

[EMBL-Structures]

yes

…

On Tue, 2019-05-14 at 09:25 +0000, biochem_fan wrote: Thanks for your report. Is this for 3D particles (i.e. subtomogram averaging)? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or mute the thread.

[biochem-fan]

Thanks. This will be fixed in the next release.