Install a bunch of R libraries #2
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Closed by #6 🎉 |
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Hey all - I think this one never got deployed (at least, I see an ❌ in the deployment field) |
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I need to open an issue about getting the GitHub actions fixed, @choldgraf. Currently this is deployed manually. |
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Hello! Apologies if this is not the appropriate place for this request (I'm still learning how to use GitHub). I would like to request an update of the VAST package to the latest 3.7.0 version. Please let me know if I should open a new issue for this. |
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@caitlinkroeger heya! I'll try to get this done over the weekend, and if not by Monday. |
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Thank you @yuvipanda - I'll keep an eye out for the update! |
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Hi! Just curious if any progress on updating VAST? Thank you!
…On Fri, Jun 11, 2021 at 1:37 PM Yuvi Panda ***@***.***> wrote:
@caitlinkroeger <https://github.com/caitlinkroeger> heya! I'll try to get
this done over the weekend, and if not by Monday.
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@caitlinkroeger can you check now? Hopefully over the next week or two we'll be able to migrate the farallon hub to our new infrastructure setup (2i2c-org/infrastructure#368) that will make these kinda updates faster. Apologies for the delay in this case. |
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Thank you for working on updating the VAST package! I received the
following warning when I loaded the package:
Warning message:
In checkMatrixPackageVersion() : Package version inconsistency detected.
TMB was built with Matrix version 1.3.4
Current Matrix version is 1.3.2
Please re-install 'TMB' from source using install.packages('TMB', type
= 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's
'Matrix' package
…On Tue, Jun 22, 2021 at 11:01 AM Yuvi Panda ***@***.***> wrote:
@caitlinkroeger <https://github.com/caitlinkroeger> can you check now?
Hopefully over the next week or two we'll be able to migrate the farallon
hub to our new infrastructure setup (2i2c-org/infrastructure#368
<2i2c-org/infrastructure#368>) that will make these
kinda updates faster. Apologies for the delay in this case.
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@caitlinkroeger I've updated the version of the 'matrix' package too! I've also moved the farallon hub to a different cluster - but nothing should be different from your end! Can you let us know if anything seems off? Thanks |
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Hello! Thank you for the update! The VAST installation is working well but
I am trying to plot some maps from the model output with code that worked
before the update and I'm getting an error that I need the package
'lwgeom'. Is emailing here okay for such requests or is there a better
place to ask for package installations in the future? Thank you!
…On Wed, Jun 23, 2021 at 9:54 AM Yuvi Panda ***@***.***> wrote:
@caitlinkroeger <https://github.com/caitlinkroeger> I've updated the
version of the 'matrix' package too! I've also moved the farallon hub to a
different cluster - but nothing should be different from your end! Can you
let us know if anything seems off? Thanks
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hey @caitlinkroeger - think you could open a new issue about this new package? I think that'll be easier to track than using this issue. You could use this issue template to do so: https://github.com/2i2c-org/pilot/issues/new?labels=enhancement&template=tech-request.md |
@trondkr requested the following R packages be installed:
parallel itsadug TMB VAST EOFR INLA car lme4 MASS MuMIn mediation nlsem lavaan semPlot mgcv mgcViz DHARMa dunn.test corrplot statmod tweedie glmmTMB data.table rgeos sf sp raster rgdal purrr ggpubr ggstance gplots gganimate splitstackshape rworldmap maptools mapdata legendMap grid rnaturalearth rnaturalearthdata viridis adehabitatMA ncdf4This would need to be added to https://github.com/2i2c-org/2i2c-pangeo-hubs/blob/staging/deployments/ohw/image/install.R. We should pin each package to current version, available via https://packagemanager.rstudio.com/client/#/repos/1/packages
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