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adding organisms to search wizard #5416

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Merged
merged 1 commit into from
Apr 14, 2025
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chris263
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@chris263 chris263 commented Apr 7, 2025

Description

Fixes #5374

Checklist

  • Refactoring only
  • Documentation only
  • Fixture update only
  • Bug fix
    • The relevant issue has been closed.
    • Further work is required.
  • New feature
    • Relevant tests have been created and run.
    • Data was added to the fixture
      • Data was added via a patch in /t/data/fixture/patches/.
    • User-Facing Change
      • The user manual in /docs has been updated.
    • Any new Perl has been documented using perldoc.
    • Any new JavaScript has been documented using JSDoc.
    • Any new legacy JavaScript has been moved from /js to /js/source/legacy.

@ryan-preble
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Was not able to get it to work after running dbpatch... STDERR says none of the views exist:
image

@chris263
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This message might be ok, because all views are dropped and then reconstructed.
Did you get the "done" message in the end?
Screenshot 2025-04-10 at 12 47 30 PM

If yes, you might be able to see in wizard the option to search for organism:
Screenshot 2025-04-10 at 12 49 43 PM

@ryan-preble
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ryan-preble commented Apr 10, 2025

This message might be ok, because all views are dropped and then reconstructed. Did you get the "done" message in the end?

If yes, you might be able to see in wizard the option to search for organism: >

Yeah I did get the message that the DB patch finished, but no organisms in wizard. No errors in STDERR either

@chris263
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Maybe need a refresh the view from wizard.

@ryan-preble
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Maybe need a refresh the view from wizard

I did that too after running dbpatch, still nothing

@chris263
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@afpowell could you also help? I am not having the same problem as Ryan's.

@afpowell
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@chris263 It worked for me, after running the db patches (I didn't need to refresh the wizard)

@chris263
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chris263 commented Apr 10, 2025

Thank you @afpowell! @ryan-preble, I think you are not seeing organisms available because of some browser cached history. This is my best guess

@ryan-preble
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Thank you @afpowell! @ryan-preble, I think you are not seeing organisms available because of some browser cached history. This is my best guess

I had already cleared the cache a few times and it did not work. But, I did get it to start working after I restarted the docker.

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👍

@lukasmueller lukasmueller merged commit d675bf1 into master Apr 14, 2025
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@lukasmueller lukasmueller deleted the topic/add_orgaism_to_wizard branch April 14, 2025 15:26
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Add the option to search organisms and download results in Search Wizard
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