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perf: autobump bio/vg/giraffe #3517

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Nov 29, 2024
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perf: autobump bio/vg/giraffe #3517

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1832049
perf: update bio/vg/giraffe/environment.yaml.
snakedeploy-bot[bot] Nov 29, 2024
270b861
perf: update env pinning.
snakedeploy-bot[bot] Nov 29, 2024
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19 changes: 10 additions & 9 deletions bio/vg/giraffe/environment.linux-64.pin.txt
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Original file line number Diff line number Diff line change
@@ -1,8 +1,9 @@
# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
# created-by: conda 24.9.2
@EXPLICIT
https://conda.anaconda.org/bioconda/linux-64/vg-1.60.0-h9ee0642_0.tar.bz2#f66289630d4f712e660657d48b227f06
https://conda.anaconda.org/bioconda/linux-64/vg-1.61.0-h9ee0642_0.tar.bz2#99eaa675134cabe9a3d5c75602156524
https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.8.30-hbcca054_0.conda#c27d1c142233b5bc9ca570c6e2e0c244
https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2#0c96522c6bdaed4b1566d11387caaf45
Expand All @@ -17,12 +18,12 @@ https://conda.anaconda.org/conda-forge/linux-64/libgomp-14.2.0-h77fa898_1.conda#
https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2#fee5683a3f04bd15cbd8318b096a27ab
https://conda.anaconda.org/conda-forge/linux-64/libgcc-14.2.0-h77fa898_1.conda#3cb76c3f10d3bc7f1105b2fc9db984df
https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.2-heb4867d_0.conda#2b780c0338fc0ffa678ac82c54af51fd
https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.3-h5888daf_0.conda#59f4c43bb1b5ef1c71946ff2cbf59524
https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.34.3-hb9d3cd8_1.conda#ee228789a85f961d14567252a03e725f
https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.4-h5888daf_0.conda#db833e03127376d461e1e13e76f09b6c
https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-14.2.0-h69a702a_1.conda#e39480b9ca41323497b05492a63bc35b
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-14.2.0-hc0a3c3a_1.conda#234a5554c53625688d51062645337328
https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.3.1-hb9d3cd8_2.conda#edb0dca6bc32e4f4789199455a1dbeb8
https://conda.anaconda.org/conda-forge/linux-64/openssl-3.3.2-hb9d3cd8_0.conda#4d638782050ab6faa27275bed57e9b4e
https://conda.anaconda.org/conda-forge/linux-64/openssl-3.4.0-hb9d3cd8_0.conda#23cc74f77eb99315c0360ec3533147a9
https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-hb9d3cd8_1002.conda#b3c17d95b5a10c6e64a21fa17573e70e
https://conda.anaconda.org/conda-forge/linux-64/xorg-libice-1.1.1-hb9d3cd8_1.conda#19608a9656912805b2b9a2f6bd257b04
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxau-1.0.11-hb9d3cd8_1.conda#77cbc488235ebbaab2b6e912d3934bae
Expand All @@ -40,7 +41,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.0.0-hd590300_1.c
https://conda.anaconda.org/conda-forge/linux-64/libmpdec-4.0.0-h4bc722e_0.conda#aeb98fdeb2e8f25d43ef71fbacbeec80
https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.44-hadc24fc_0.conda#f4cc49d7aa68316213e4b12be35308d1
https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.47.0-hadc24fc_1.conda#b6f02b52a174e612e89548f4663ce56a
https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.0-h0841786_0.conda#1f5a58e686b13bcfde88b93f547d23fe
https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.11.1-hf672d98_0.conda#be2de152d8073ef1c01b7728475f2fe7
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-14.2.0-h4852527_1.conda#8371ac6457591af2cf6159439c1fd051
https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.38.1-h0b41bf4_0.conda#40b61aab5c7ba9ff276c41cfffe6b80b
https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.4.0-hd590300_0.conda#b26e8aa824079e1be0294e7152ca4559
Expand All @@ -65,11 +66,11 @@ https://conda.anaconda.org/conda-forge/linux-64/fontconfig-2.15.0-h7e30c49_1.con
https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.3-h659f571_0.conda#3f43953b7d3fb3aaa1d0d0723d91e368
https://conda.anaconda.org/conda-forge/linux-64/libglib-2.82.2-h2ff4ddf_0.conda#13e8e54035ddd2b91875ba399f0f7c04
https://conda.anaconda.org/conda-forge/linux-64/libtiff-4.7.0-h6565414_0.conda#80eaf80d84668fa5620ac9ec1b4bf56f
https://conda.anaconda.org/conda-forge/linux-64/python-3.13.0-h9ebbce0_100_cp313.conda#08e9aef080f33daeb192b2ddc7e4721f
https://conda.anaconda.org/conda-forge/linux-64/python-3.13.0-h9ebbce0_101_cp313.conda#f4fea9d5bb3f2e61a39950a7ab70ee4e
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxext-1.3.6-hb9d3cd8_0.conda#febbab7d15033c913d53c7a2c102309d
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxfixes-6.0.1-hb9d3cd8_0.conda#4bdb303603e9821baf5fe5fdff1dc8f8
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxrender-0.9.11-hb9d3cd8_1.conda#a7a49a8b85122b49214798321e2e96b4
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxt-1.3.0-hb9d3cd8_2.conda#d8602724ac0d276c380b97e9eb0f814b
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxt-1.3.1-hb9d3cd8_0.conda#279b0de5f6ba95457190a1c459a64e31
https://conda.anaconda.org/conda-forge/linux-64/cairo-1.18.0-hebfffa5_3.conda#fceaedf1cdbcb02df9699a0d9b005292
https://conda.anaconda.org/conda-forge/linux-64/lcms2-2.16-hb7c19ff_0.conda#51bb7010fc86f70eee639b4bb7a894f5
https://conda.anaconda.org/conda-forge/linux-64/libcups-2.3.3-h4637d8d_4.conda#d4529f4dff3057982a7617c7ac58fde3
Expand All @@ -82,5 +83,5 @@ https://conda.anaconda.org/bioconda/linux-64/htslib-1.21-h5efdd21_0.tar.bz2#06b9
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxtst-1.2.5-hb9d3cd8_3.conda#7bbe9a0cc0df0ac5f5a8ad6d6a11af2f
https://conda.anaconda.org/conda-forge/linux-64/openjdk-22.0.1-h8651b0f_1.conda#672153e7c3d4f70bc65993f3ee513768
https://conda.anaconda.org/bioconda/linux-64/samtools-1.21-h50ea8bc_0.tar.bz2#4a7fe11223f61cb2d950ed54e20c12ce
https://conda.anaconda.org/bioconda/noarch/fgbio-minimal-2.3.0-hdfd78af_0.tar.bz2#48e39a611203a971c32302c8d0151432
https://conda.anaconda.org/bioconda/noarch/picard-slim-3.2.0-hdfd78af_0.tar.bz2#b96f183b2167c69b4784ef921bef19ab
https://conda.anaconda.org/bioconda/noarch/fgbio-minimal-2.4.0-hdfd78af_0.tar.bz2#deaf884ad81a10d3eac3243c2ee53936
https://conda.anaconda.org/bioconda/noarch/picard-slim-3.3.0-hdfd78af_0.tar.bz2#fab4a4639fd22cd155b740fce3064944
6 changes: 3 additions & 3 deletions bio/vg/giraffe/environment.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,8 @@ channels:
- bioconda
- nodefaults
dependencies:
- vg =1.60
- fgbio-minimal =2.3.0
- vg =1.61.0
- fgbio-minimal =2.4.0
- samtools =1.21
- picard-slim =3.2.0
- picard-slim =3.3.0
- snakemake-wrapper-utils =0.6.2
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