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SVChordinator

merge, annotate, and visualize structural variants (as "chords" in a circos plot).

Currently supports the following callers:

  • SvABA
  • manta
  • GRIPSS
  • nanomonsv
  • SAVANA
  • Severus
  • cuteSV
  • Sniffles2

input tsv file with paths to vcf must follow format of the config/example_samples.tsv file, in which callers are labeled with the names of the tools