BioJulia

All

87 repositories

BioStructures.jl
Public
A Julia package to read, write and manipulate macromolecular structures
bioinformatics biology structural-biology pdb julia protein-structure structural-bioinformatics biojulia
Julia
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Other
•23•99•8•0•Updated Apr 14, 2025Apr 14, 2025
MemoryViews.jl
Public
Simple, low-level views into memory in Julia
Julia
•
MIT License
•1•18•0•2•Updated Apr 8, 2025Apr 8, 2025
ProteinSecondaryStructures.jl
Public
Wrapper to protein secondary structure calculation packages
Julia
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MIT License
•1•12•0•0•Updated Apr 3, 2025Apr 3, 2025
XAM.jl
Public
Parse and process SAM and BAM formatted files
bam-files bioinformatics sam bam sam-files sam-format bam-format biojulia
Julia
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MIT License
•15•29•22•6•Updated Apr 1, 2025Apr 1, 2025
SingleCellProjections.jl
Public
Analysis of Single Cell Expression data in Julia
Julia
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Other
•3•19•4•0•Updated Mar 27, 2025Mar 27, 2025
BioTutorials
Public
Tutorial Notebooks of BioJulia
julia
Jupyter Notebook
•8•35•5•1•Updated Mar 10, 2025Mar 10, 2025
NCBIBlast.jl
Public
Thin wrapper around NCBI's BLAST+ CLI https://www.ncbi.nlm.nih.gov/books/NBK569856/
Julia
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MIT License
•2•6•1•1•Updated Mar 10, 2025Mar 10, 2025
GenomicAnnotations.jl
Public
bioinformatics biology julia genome-annotation gff3 genbank genes
Julia
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MIT License
•4•16•1•0•Updated Mar 3, 2025Mar 3, 2025
BioMakie.jl
Public
Plotting and interface tools for biology.
Julia
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MIT License
•4•62•4•10•Updated Mar 1, 2025Mar 1, 2025
BioJuliaDocs
Public
Julia
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MIT License
•3•5•4•1•Updated Feb 28, 2025Feb 28, 2025
XAMAuxData.jl
Public
Read auxiliary data fields in SAM, GFA and PAF formats
Julia
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MIT License
•0•1•0•1•Updated Feb 25, 2025Feb 25, 2025
PairwiseMappingFormat.jl
Public
Parser for the PAF format in bioinformatics
Julia
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MIT License
•0•2•0•0•Updated Feb 25, 2025Feb 25, 2025
CIGARStrings.jl
Public
Read and write Concise Idiosyncratic Gapped Alignment Reports.
Julia
•0•0•0•0•Updated Jan 23, 2025Jan 23, 2025
biojulia.github.io
Public
BioJulia's Website
bioinformatics biology julia
HTML
•5•7•6•1•Updated Jan 6, 2025Jan 6, 2025
Kmers.jl
Public
Efficient types and methods for K-mer biosequences
Julia
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MIT License
•7•26•1•2•Updated Dec 24, 2024Dec 24, 2024
BioSequences.jl
Public
Biological sequences for the julia language
bioinformatics biological-sequences biojulia biology
Julia
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MIT License
•48•154•18•5•Updated Dec 22, 2024Dec 22, 2024
BioMarkovChains.jl
Public
Representing biological sequences as Markov chains
bioinformatics biology julia markov-chain dna julialang
Julia
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MIT License
•2•8•0•1•Updated Dec 9, 2024Dec 9, 2024
Automa.jl
Public
A julia code generator for regular expressions
regular-expression julia
Julia
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Other
•16•190•8•0•Updated Dec 2, 2024Dec 2, 2024
PopGen.jl
Public
Population Genetics in Julia
snps genomics genetics structure popgen fst microsatellites
Julia
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MIT License
•16•51•4•1•Updated Nov 26, 2024Nov 26, 2024
PopGenCore.jl
Public
Core utilities for PopGen.jl, including the PopData type and file IO
Julia
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MIT License
•1•6•3•0•Updated Nov 26, 2024Nov 26, 2024
FASTX.jl
Public
Parse and process FASTA and FASTQ formatted files of biological sequences.
parsing bio file-format fasta fastq-format fastq fastq-files fasta-format biojulia fasta-files
Julia
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MIT License
•21•62•4•1•Updated Oct 22, 2024Oct 22, 2024
BioTools.jl
Public archive
DEPRECATED Interfaces to common external biological tools from julia scripts and programs
Julia
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MIT License
•7•14•0•0•Updated Oct 8, 2024Oct 8, 2024
GenomicFeatures.jl
Public
Tools for genomic features in Julia.
Julia
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Other
•13•32•3•0•Updated Oct 1, 2024Oct 1, 2024
BioAlignments.jl
Public
Sequence alignment tools
bam-files bioinformatics biology high-throughput-sequencing dna-sequences sequence-alignment sequence-analysis smith-waterman-alignment sam-files biojulia
Julia
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MIT License
•24•62•22•1•Updated Aug 7, 2024Aug 7, 2024
BED.jl
Public
bioinformatics bed-format
Julia
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MIT License
•6•6•3•3•Updated Jul 31, 2024Jul 31, 2024
MMTF.jl
Public
A Julia package to read and write MMTF files
bioinformatics pdb julia-package mmtf rcsb
Julia
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MIT License
•4•9•0•0•Updated Jul 29, 2024Jul 29, 2024
BioGenerics.jl
Public
Generic methods, types and modules for the BioJulia ecosystem.
Julia
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MIT License
•4•12•2•1•Updated Jul 11, 2024Jul 11, 2024
BioJuliaTemplate.jl
Public
Template package for BioJulia
Julia
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MIT License
•0•0•0•0•Updated Jun 24, 2024Jun 24, 2024
FormatSpecimens.jl
Public
Biological file format specimens for testing packages, and functions to assist in testing.
Julia
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Other
•3•13•0•0•Updated Jun 24, 2024Jun 24, 2024
BioSymbols.jl
Public
Nucleic and amino acid primitive types
bioinformatics computational-biology biological-data-analysis amino-acids nucleotides nucleic-acids biojulia biology
Julia
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MIT License
•14•30•3•2•Updated Jun 23, 2024Jun 23, 2024