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switch to r-lib/actions/setup-r-dependencies@v2 #274

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switch to r-lib/actions/setup-r-dependencies@v2 #274

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1fcaf35
switch to r-lib/actions/setup-r-dependencies@v2
m7pr Jan 29, 2025
41e9e64
remove inputs that do not exist in r-lib/actions/setup-r-dependncies …
m7pr Jan 29, 2025
b9096a7
remove lookup-refs, skip-desc-branch, skip-desc-dev and repository-list
m7pr Jan 30, 2025
ba60dbe
Update .github/workflows/revdepcheck.yaml
m7pr Jan 31, 2025
1ed87bf
change repository-path to working-directory
m7pr Feb 3, 2025
d64903a
Merge branch 'rlib_setup_r_dependencies' of https://github.com/insigh…
m7pr Feb 3, 2025
46627aa
remove skip-install and restore-description
m7pr Feb 3, 2025
ba95801
Merge branch 'main' into rlib_setup_r_dependencies
m7pr Feb 3, 2025
b0b08e0
Merge branch 'main' into rlib_setup_r_dependencies
m7pr Feb 11, 2025
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8 changes: 1 addition & 7 deletions .github/workflows/bioccheck.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -61,12 +61,6 @@ on:
required: false
type: string
default: staged-dependencies
lookup-refs:
description: |
List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: ""

concurrency:
group: bioccheck-${{ github.event.pull_request.number || github.ref }}
Expand Down Expand Up @@ -158,7 +152,7 @@ jobs:
- name: Setup R dependencies 🎦
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Adding a comment, so it can not be merged.
It should not be merged before other packages are not suited for changes introduced in this PR.
Other packages are tracked in this card insightsengineering/nestdevs-tasks#103

if: >-
inputs.deps-installation-method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
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33 changes: 3 additions & 30 deletions .github/workflows/build-check-install.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -138,40 +138,13 @@ on:
required: false
type: string
default: staged-dependencies
lookup-refs:
description: |
List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: ""
skip-desc-branch:
description: |
Passed to `insightsengineering/setup-r-dependencies`.
Used only if deps-installation-method == 'setup-r-dependencies'.
required: false
type: boolean
default: false
skip-desc-dev:
description: |
Passed to `insightsengineering/setup-r-dependencies`.
Used only if deps-installation-method == 'setup-r-dependencies'.
required: false
type: boolean
default: false
repository-list:
description: |
Passed to `insightsengineering/setup-r-dependencies`.
Used only if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: "PPM=PPM@latest"
cache-version:
description: |
Passed to `insightsengineering/setup-r-dependencies`.
Passed to `r-lib/actions/setup-r-dependencies`.
Used only if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: "1"
default: 1
unit-test-report-brand:
description: Image URL to use in unit test report for branding. If empty, the default xunit-viewer brand will be used.
required: false
Expand Down Expand Up @@ -441,7 +414,7 @@ jobs:
if: >-
env.deps_installation_method == 'setup-r-dependencies'
&& inputs.install-deps-from-package-repositories == ''
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
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8 changes: 1 addition & 7 deletions .github/workflows/pkgdown.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -128,12 +128,6 @@ on:
required: false
type: string
default: staged-dependencies
lookup-refs:
description: |
List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: ""

concurrency:
group: docs-${{ github.event.pull_request.number || github.ref }}
Expand Down Expand Up @@ -230,7 +224,7 @@ jobs:
- name: Setup R dependencies 🎦
if: >-
inputs.deps-installation-method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down
4 changes: 2 additions & 2 deletions .github/workflows/revdepcheck.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -91,7 +91,7 @@ jobs:
shell: bash

- name: Install dependencies
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand All @@ -100,7 +100,7 @@ jobs:

- name: revdepcheck 🔄
id: revdepcheck
uses: insightsengineering/r-revdepcheck-action@main
uses: r-lib/r-revdepcheck-action@main
with:
github-token: ${{ steps.github-token.outputs.token }}
additional-env-vars: ${{ inputs.additional-env-vars }}
Expand Down
11 changes: 2 additions & 9 deletions .github/workflows/rhub.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -40,13 +40,6 @@ on:
gcc13,
noSuggests,
donttest
lookup-refs:
description: |
List of package references to be used for the feature branch.
Multiple entries in new lines or separated by commas.
required: false
default: ""
type: string

concurrency:
group: r-hub-${{ github.event.pull_request.number || github.ref }}
Expand Down Expand Up @@ -96,7 +89,7 @@ jobs:
with:
job-config: ${{ matrix.config.job-config }}

- uses: insightsengineering/setup-r-dependencies@v1
- uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down Expand Up @@ -149,7 +142,7 @@ jobs:
with:
job-config: ${{ matrix.config.job-config }}

- uses: insightsengineering/setup-r-dependencies@v1
- uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down
9 changes: 1 addition & 8 deletions .github/workflows/roxygen.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -49,13 +49,6 @@ on:
required: false
type: string
default: staged-dependencies
lookup-refs:
description: |
Passed to insightsengineering/setup-r-dependencies. See its documentation.
Used only if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: ""
secrets:
REPO_GITHUB_TOKEN:
description: |
Expand Down Expand Up @@ -152,7 +145,7 @@ jobs:
- name: Setup R dependencies 🎦
if: >-
env.deps_installation_method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down
8 changes: 1 addition & 7 deletions .github/workflows/test-coverage.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -90,12 +90,6 @@ on:
required: false
type: string
default: staged-dependencies
lookup-refs:
description: |
List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: ""
secrets:
REPO_GITHUB_TOKEN:
description: |
Expand Down Expand Up @@ -243,7 +237,7 @@ jobs:
- name: Setup R dependencies 🎦
if: >-
inputs.deps-installation-method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down
8 changes: 1 addition & 7 deletions .github/workflows/validation.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -46,12 +46,6 @@ on:
required: false
type: string
default: staged-dependencies
lookup-refs:
description: |
List of package references to be used by setup-r-dependencies action if deps-installation-method == 'setup-r-dependencies'.
required: false
type: string
default: ""
secrets:
REPO_GITHUB_TOKEN:
description: |
Expand Down Expand Up @@ -147,7 +141,7 @@ jobs:
- name: Setup R dependencies 🎦
if: >-
inputs.deps-installation-method == 'setup-r-dependencies'
uses: insightsengineering/setup-r-dependencies@v1
uses: r-lib/actions/setup-r-dependencies@v2
env:
GITHUB_PAT: ${{ steps.github-token.outputs.token }}
with:
Expand Down