Update gr_resources.md (#1568)

* Update gr_resources.md First test for adding content in the page * Update gr_resources.md * Update gr_resources.md Edits and one additional tool "ARGOS" * Update gr_resources.md Removed twitter account mention * fix build * Update gr_resources.md Followed reviewers latest suggestions * Update gr_resources.md * Update gr_resources.md Added contributors and coordinators * Update gr_resources.md Added argos id * add greece to sidebar * add news article * Update CONTRIBUTORS.yaml Added Eleni, Thanasis and Alexandros as contributors * Update gr_resources.md Added Funders, Policies and one additional national resource. * Update gr_resources.md added tool assembly in related paged of the Greek covid-19 portal * Update gr_resources.md rephrased hypatia description * Update gr_resources.md elixir greece titles * Update gr_resources.md Removed the DMP submission requirement from HFRI * Update gr_resources.md Added 2 training Zenodo inputs * Update gr_resources.md GDI updates, Zenodo training edits * Update gr_resources.md HFRI DMP requirement clarification and minor zenodo publication edit. * Update gr_resources.md Added related pages to HYPATIA and GDI * update date * fix url * Update gr_resources.md Corrected the related pages categories and ids in hypatia and gdi * Update gr_resources.md * some formatting * Update gr_resources.md Fixed GDI link to hyperlink * Update news.yml fixed news description * Update news.yml --------- Co-authored-by: bedroesb <[email protected]> Co-authored-by: Bert Droesbeke <[email protected]> Co-authored-by: Nazeeefa <[email protected]>
elixir-europe · Feb 27, 2025 · 5b9b0ba · 5b9b0ba
1 parent 65a6a3b
commit 5b9b0ba
Show file tree

Hide file tree

Showing 4 changed files with 100 additions and 45 deletions.
diff --git a/_data/CONTRIBUTORS.yaml b/_data/CONTRIBUTORS.yaml
@@ -651,3 +651,17 @@ Espen Åberg:
     email: [email protected]
     orcid: 0000-0002-2280-7978
     affiliation: UiT The Arctic University of Norway / ELIXIR-NO
+Eleni Adamidi:
+    git: eleni-adamidi
+    email: [email protected]
+    orcid: 0000-0001-9925-1560 
+    affiliation: Athena Research and Innovation Center / ELIXIR-GR
+Thanasis Vergoulis:
+    git: vergoulis
+    email: [email protected]
+    orcid: 0000-0003-0555-4128
+    affiliation: Athena Research and Innovation Center / ELIXIR-GR
+Alexandros Dimopoulos:
+    email: [email protected]
+    orcid: 0000-0002-4602-2040
+    affiliation: Biomedical Sciences Research Center Alexander Fleming / ELIXIR-GR
diff --git a/_data/news.yml b/_data/news.yml
@@ -198,3 +198,7 @@
   date: 2024-12-06
   linked_pr: 1528
   description: This page guides you with capturing your planned data workflow in a diagram. [Discover the page here](creating_dataflow_diagram).
+- name: "New page: National resources Greece"
+  date: 2025-02-27
+  linked_pr: 1568
+  description: This page provides insights into RDM on a national level in Greece. [Discover the page here](gr_resources)
diff --git a/_data/sidebars/data_management.yml b/_data/sidebars/data_management.yml
@@ -166,6 +166,8 @@ subitems:
         url: /fi_resources
       - title: France
         url: /fr_resources
+      - title: Greece
+        url: /gr_resources       
       - title: Italy
         url: /it_resources
       - title: Ireland

diff --git a/pages/national_resources/gr_resources.md b/pages/national_resources/gr_resources.md
@@ -1,65 +1,100 @@
 ---
-
 title: Greece
-search_exclude: true
-description: <!---REPLACE THIS with a one sentence description of the page--->
+description: A comprehensive guide to research data management (RDM) in Greece, featuring tools, resources, and services tailored for the life sciences community.
 country_code: GR
-contributors: [<!---REPLACE THIS with comma separated list of contributors--->]
-coordinators: [<!---REPLACE THIS with the name of data management coordinators of your ELIXIR node--->]
-
-# Link to other pages in the tool assembly section on the RDMkit by listing the page_id 
-related_pages:
-  tool_assembly: [<!---REPLACE THIS with the page ID of the tool_assembly pages that you want to list here as related pages--->]
+contributors: [Eleni Adamidi, Thanasis Vergoulis, Alexandros Dimopoulos]
+coordinators: [Thanasis Vergoulis, Alexandros Dimopoulos]
 
 training:
-  - name: Training in TeSS
-    registry: TeSS
-    url: <!--- https://tess.elixir-europe.org/materials?node=NODENAME --->
-  - name: ELIXIR NODENAME community in Zenodo
+  - name: "ELIXIR GREECE: Prospects of data and tools for ELIXIR Greece"
+    registry: Zenodo
+    description: This presentation provides an overview of the data, tools, and standards used in ELIXIR Greece, as well as guidelines for effective research data management, with an emphasis on best practices for open science and data stewardship.
+    url: https://zenodo.org/records/4043630#.ZACFtE_Nx60
+  - name: "The ELIXIR GREECE Galaxy server including best practices tools and workflows for the analysis of SARS-CoV-2 data"
     registry: Zenodo
-    url: <!--- https://zenodo.org/communities/elixir NODENAME --->
-  - name: ELIXIR NODENAME YouTube
-    registry: YouTube
-    url: <!--- URL of the channel --->
-  - name: <!---REPLACE THIS with the name of your training in registry or platform--->
-    registry: <!---REPLACE THIS with the name of the registry--->
-    url: <!---REPLACE THIS with the url of your training registry or platform--->
+    description: This presentation highlights how the local Greek Galaxy instance at usegalaxy.elixir-greece.org makes SARS-CoV-2 data analysis accessible and reproducible using open software and public research infrastructures. It showcases practical workflows in genomics, proteomics, evolution, and cheminformatics, with comprehensive training materials available to support collaborative research.
+    url: https://zenodo.org/records/4042834#.ZACFUk9vD9M
 
 # Refer to entries of the "main_tool_ and_resource_table" if institutions, organizations and projects from the country contribute to the development of international tools and resources. 
-ref_to_main_resources: 
-  -  <!---REPLACE THIS with the tool id--->
+
+ref_to_main_resources:
+  - argos
 
 # List here tools and resources mainly relevant for the specific country
 national_resources: 
-  - name: <!---REPLACE THIS with the national resources about RDM in life sciences such as local instances of tools, guidelines or regulations--->
-    description:
-    how_to_access: <!--- REPLACE THIS free text to explain if credentials, login, specific affiliations, etc., are needed to access the resource or tool--->
-    instance_of: <!--- REPLACE THIS with the tool id of which this resource is an instance of, taken from the all tools and resources file --->
+  - name: HYPATIA - Cloud Infrastructure for ELIXIR Greece
+    description:  HYPATIA is a cloud-based infrastructure that has been developed to support the computational needs of the ELIXIR Greece community and the wider life sciences community including researchers and institutions in Greece and internationally.
+    how_to_access:  Login via Life Science (LS) Login required.
     related_pages:
-      tool_assembly: [<!---REPLACE THIS with the page ID of the tool_assembly pages that you want to list here as related pages--->]
-      your_domain: [<!---REPLACE THIS with the page ID of the domain pages that you want to list here as related pages--->]
-      your_role: [<!---REPLACE THIS with the page ID of the your_role pages that you want to list here as related pages--->]
-      your_tasks: [<!---REPLACE THIS with the page ID of the your_tasks pages that you want to list here as related pages--->]
-    url:
-    registry:
-      biotools: <!--- DELETE ME if not needed --->
-      fairsharing: <!--- DELETE ME if not needed --->
-      tess: <!--- DELETE ME if not needed --->
----
-<!---All the resources added above will appear on the table at the bottom of the page--->
+      your_tasks: [data_analysis, storage, transfer]
+    url: https://hypatia.athenarc.gr/
+
+  - name: National instance of Genomic Data Infrastructure for ELIXIR Greece
+    description:  An instance of the Genomic Data Infrastructure [GDI](https://gdi.onemilliongenomes.eu/) on ELIXIR Greece, for secure genomic data management, including storage, discovery, access, and reception. This is a pilot instance based on the GDI Starter Kit.
+    how_to_access:  Login via Life Science (LS) Login required to access ELIXIR-Greece GDI Portal.
+    related_pages:
+      your_domain: [human_data]
+      your_tasks: [sensitive, data_publication, existing_data]
+    url: https://login.gdi.elixir-greece.org/
 
-<!---Following information for the page text--->
-<!---Use this template as guidance, all fields are optional. Feel free to modify any section if you think it is necessary--->
-<!---If the information is already in another resource, please include the link instead of duplicating information--->
-<!---Please focus on resources that are relevant for the whole country for life sciences--->
+  - name: Greek COVID-19 Portal
+    description: Provides information, guidelines, tools and services to support researchers to utilise Greek and European infrastructures for data sharing. The portal is a national node of the European COVID-19 Data Portal.
+    url: https://covid19dataportal.gr/
+    related_pages:
+     tool_assembly: [covid19_data_portal]
+    instance_of: covid-19-data-portal
+
+
+---
 
 ## Introduction 
-<!---General RDM considerations for your country, how to deal with RDM on a national level--->
+This page provides useful information and resources with a focus on research data management in Greece. An overview of services provided by ELIXIR Greece can be found on [the node website](https://www.elixir-greece.org/node/268) .
 
-## Funders
+<!---## Funders--->
 
-## Regulations
+<!---## Regulations--->
 <!--- Ethical and legal regulations in the country, committees, etc. --->
 
+## Funders in Greece
+Research funding in Greece is primarily provided by **National and European funding agencies**. The major national funders supporting Open Science and Research Data Management (RDM) include:
+
+- The **[Hellenic Foundation for Research and Innovation (HFRI)](https://www.elidek.gr/)** which is a key funder supporting fundamental and applied research in Greece. 
+
+  HFRI Policies and Requirements:
+  - Encourages Open Science and FAIR data principles.
+  - Requires researchers to submit a Data Management Plan (DMP) in various time points depending on each call.
+  - Supports infrastructure for Open Access to research outputs.
+
+- The **[General Secretariat for Research and Innovation (GSRI)](https://gsri.gov.gr/)** which operates under the Ministry of Development and Investments and funds major research projects in Greece. 
+
+  GSRI Policies and Requirements:
+  - Funds research projects across all disciplines, including Open Science initiatives.
+  - Promotes adherence to EOSC policies and data sharing.
+  - Provides funding for data infrastructures, repositories, and research data management tools.
+
+## Policies and Recommendations for Research Data in Greece
+
+Greece has made significant progress in adopting Open Science policies, aligning with European initiatives such as the European Open Science Cloud (EOSC). The country has established a national initiative called **Hellenic Open Science Initiative** to coordinate and implement national policies for Open Science and research data management.
+
+- The **[Hellenic Open Science Initiative (HOSI)](https://www.hellenicopenscience.gr/en/welcome-to-os-greece/about-hosi)** was founded on February 28, 2022, by 13 leading Greek research, technology, and innovation organizations. Its goal is to support the coordinated and participatory implementation of Open Science policies in Greece while ensuring national representation in EOSC.
+
+  HOSI Key Policies:
+   - Open Science is a national priority and is integrated into Greece’s Digital Transformation Strategy.
+   - Policies are based on the principle "as open as possible, as closed as necessary."
+   - National coordination efforts support FAIR (Findable, Accessible, Interoperable, Reusable) data principles.
+
+- The **National Research Data Management Policy** aims to ensure open access to research data, particularly for publicly funded research. The policy is outlined in the **[National Plan for Open Science](https://zenodo.org/records/3908953#.Ye7gdepBw2w)**, including:
+
+  Key Principles:
+   - **Open by default**: Research data must be openly available unless legal or ethical restrictions apply.
+   - **FAIR principles**: Research data should be managed following international standards for metadata and licensing.
+   - **Permanent Identifiers**: Research data must be assigned persistent digital identifiers (DOIs).
+   - **Machine-readable metadata**: Research software must be documented using OpenAIRE Guidelines, codemeta.json, and schema.org.
+   - **Open Data Licenses**: Researchers should use standardized open licenses, with a preference for CC-BY (Attribution Only).
+   - **Mandatory Data Management Plans (DMPs)**: All research projects must include a Data Management Plan (DMP).
+
+- Part of the **National Research Data Management Policy** has been embedded in the Greece’s **[Digital Transformation Strategy 2020-2025](https://digitalstrategy.gov.gr/vivlos_pdf)**. This strategy highlights Open Science as a key pillar for modernizing the country’s research landscape outlining its importance in fostering collaboration, transparency, and innovation in scientific research. The strategy aligns with European Open Science Cloud (EOSC) guidelines, ensuring interoperability with European research infrastructures and reinforcing Greece’s role in EOSC.  
+
 ## Domain-specific infrastructures or resources 
-<!--- e.g. human data, covid-19. Please, only add domain-specific resources that you think don't fit in the table at the bottom--->
+The [Greek COVID-19 Portal](https://covid19dataportal.gr/) provides information, guidelines, tools and services to support researchers to utilise Greek and European infrastructures for data sharing. The portal is a national node of the European COVID-19 Data Portal.
+