Dev

[xuebingjie1990]

• update pipeline to work with new BedBaseConf / pipestat
• pre-compute trackHub dir

[stolarczyk]

let's also work on code style/formatting. I noticed things like:

• mixed use of '' and "" for strings
• lines over 80 chars
• missing spaces between function parameters

[stolarczyk]

change to some lab email?

[xuebingjie1990]

what email should I use?

[stolarczyk]

maybe the one we use for auto uploading software to pypi? I can't seem to find it. @nsheff do you remember the email address?

[nsheff]

@stolarczyk do you have a linting system you recommend for Python style to help people become familiar with good style?

[stolarczyk]

no, but adding one is a great idea. I'll see what are the options and test things out.

[stolarczyk]

it looks like black is the most used one, it's also developed by a Python core developer. I tested it in bbconf and it worked perfectly fine: https://github.com/databio/bbconf/pull/9/checks?check_run_id=1954455626

What's interesting, the default line length cutoff is 88: https://black.readthedocs.io/en/stable/the_black_code_style.html#line-length