Improvements for Cameron #11
Workflow file for this run
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| name: Test stable release | |
| on: | |
| workflow_dispatch: | |
| workflow_call: | |
| pull_request: | |
| branches: ["main"] | |
| env: | |
| HDF5_MPI: "ON" | |
| HDF5_DIR: "/usr/local/" | |
| DISPLAY: ":99.0" | |
| DEB_PYTHON_INSTALL_LAYOUT: deb_system | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/cianwilson/fenicsx_subduction:v0.8.0 | |
| env: | |
| PYVISTA_OFF_SCREEN: true | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Initialize | |
| run: | | |
| git config --global --add safe.directory "$GITHUB_WORKSPACE" | |
| python3 -c "from pyvista import start_xvfb; start_xvfb(0.1)" | |
| - name: Check scripts are up to date | |
| working-directory: notebooks | |
| run: | | |
| jupyter nbconvert --NbConvertApp.export_format=script --ClearOutputPreprocessor.enabled=True Poisson1D.ipynb | |
| jupyter nbconvert --NbConvertApp.export_format=script --ClearOutputPreprocessor.enabled=True Poisson2D.ipynb | |
| jupyter nbconvert --NbConvertApp.export_format=script --ClearOutputPreprocessor.enabled=True Poisson2DSolutions.ipynb | |
| jupyter nbconvert --NbConvertApp.export_format=script --ClearOutputPreprocessor.enabled=True SubductionBenchmark.ipynb | |
| jupyter nbconvert --NbConvertApp.export_format=script --ClearOutputPreprocessor.enabled=True SubductionBenchmarkSolutions.ipynb | |
| git diff --name-only --exit-code || { retcode=$?; echo "Python scripts not up to date with notebook files. Please update."; exit $retcode; } | |
| - name: Check notebooks are clean | |
| working-directory: notebooks | |
| run: | | |
| jupyter nbconvert --clear-output --inplace Poisson1D.ipynb | |
| jupyter nbconvert --clear-output --inplace Poisson2D.ipynb | |
| jupyter nbconvert --clear-output --inplace Poisson2DSolutions.ipynb | |
| jupyter nbconvert --clear-output --inplace SubductionBenchmark.ipynb | |
| jupyter nbconvert --clear-output --inplace SubductionBenchmarkSolutions.ipynb | |
| git diff --name-only --exit-code || { retcode=$?; echo "Jupyter notebooks are not clear. Please clear output."; exit $retcode; } | |
| - name: Test background | |
| working-directory: notebooks | |
| run: | | |
| mpirun -n 2 python3 Poisson1D.py | |
| mpirun -n 2 python3 Poisson2DSolutions.py | |