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Basic documentation for readthedocs#191

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jchodera merged 30 commits intomasterchoderalab/openmmtools:masterfrom docschoderalab/openmmtools:docsCopy head branch name to clipboardMay 15, 2017

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Commits

Commits on May 13, 2017

• Purge old broken docs framework

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• Use sphinx-quickstart docs skeleton

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• Draft documentation

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• Fix typo

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• Fix typos

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• Add alchemy section

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• Add google analytics tracking ID

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• Misc docs cleanup

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• Clean up MCMC docs

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• Fix paths for RTD

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• Add YAML files for readthedocs

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• Update RTD file

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• Update RTD config

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• More RTD configuration

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• Disable sphinx githubpages

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• Add RTD badge

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• Add Zenodo badge

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• Merge remote-tracking branch 'origin/master' into docs

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Commits on May 14, 2017

• Suppress function signatures from API indices

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• Update test system categories

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• Add states docs

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• Clean up links to OpenMM classes.

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• Recommend Python 3

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• Add scripts docs

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• Clean up README now that docs are online.

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• Fix links in README

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• Clean up README

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• More README link fixes

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• Fix MCMC docs page

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• Only run fast testsystem potential energy tests to prevent travis timeout failures.

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