Under development
Seqkit is an automated workflow designed to perform tasks such as quality controls (QC) of raw reads, aligning to reference genome, peak-calling of ChIPSeq reads and further analysis.
Currently the tool represents like an internal toolkit to analyse NGS data in Ericson lab.
- command line usage
Details on the installation procedures can be found below.
Requirements: Python 2.7, Uppmax
Commands:
git clone https://github.com/ashwini06/seqkit
or download zip
cd seqkit
python setup.py install
Done.