Code

Edge encoding#15

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cecileane merged 15 commits intomainJuliaPhylo/PhyloCoalSimulations.jl:mainfrom edge_encodingJuliaPhylo/PhyloCoalSimulations.jl:edge_encodingCopy head branch name to clipboardDec 11, 2024

+292-129

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Commits on Oct 31, 2024

• Added encoding utility for edges

  jjustison

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  d1be893

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• make new tests actually tested

  jjustison

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• actually test the encoding

  jjustison

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Commits on Nov 20, 2024

• v0.1.4 prep: compat update to PhyloNetworks v0.17

  cecileane

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• tagbot permissions

  cecileane

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Commits on Nov 22, 2024

• added manual entry for edge encoding.

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  jjustison

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• Merge branch 'dev' of https://github.com/JuliaPhylo/PhyloCoalSimulations.jl into edge_encoding

  jjustison

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• update read and write functions to align with PhyloNetworks 0.17

  jjustison

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Commits on Nov 24, 2024

• Tests pass. Updated documentation for edge encoding.

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  jjustison

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Commits on Nov 25, 2024

• tests but not PCS depend on SNaQ; tests for unique species node names; favor population_mappedto

  cecileane

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Commits on Nov 26, 2024

• encode_edges -> gene_edgemapping

  cecileane

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Commits on Nov 30, 2024

• dependabot; codecov-action bumped to v5

  cecileane

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Commits on Dec 3, 2024

• rm SNaQ to run tests; require instead PN v1, for countquartetsintrees

  cecileane

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Commits on Dec 10, 2024

• v1.0.0

  cecileane

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Commits on Dec 11, 2024

• add package citation

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