Skip to content
@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

Popular repositories Loading

  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 78 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 33 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 269 repositories
  • jacs-cm Public

    JACS Configuration Management

    JaneliaSciComp/jacs-cm’s past year of commit activity
    XSLT 8 3 17 3 Updated Jan 24, 2025
  • workstation Public

    Janelia Workstation

    JaneliaSciComp/workstation’s past year of commit activity
    Java 24 11 0 12 Updated Jan 24, 2025
  • jacs-compute Public

    JAnelia Compute Services (JACS)

    JaneliaSciComp/jacs-compute’s past year of commit activity
    Java 1 BSD-3-Clause 0 0 0 Updated Jan 24, 2025
  • neuronbridge Public

    EM/LM neuron search

    JaneliaSciComp/neuronbridge’s past year of commit activity
    JavaScript 4 BSD-3-Clause 1 0 9 Updated Jan 24, 2025
  • jacs-storage Public

    JADE file storage services

    JaneliaSciComp/jacs-storage’s past year of commit activity
    Java 0 BSD-3-Clause 0 0 1 Updated Jan 24, 2025
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 0 BSD-3-Clause 1 11 1 Updated Jan 24, 2025
  • easifish Public
    JaneliaSciComp/easifish’s past year of commit activity
    Nextflow 0 BSD-3-Clause 0 0 0 Updated Jan 24, 2025
  • fileglancer Public

    Browse, share, and publish data in the Janelia file system

    JaneliaSciComp/fileglancer’s past year of commit activity
    TypeScript 0 BSD-3-Clause 0 2 0 Updated Jan 24, 2025
  • JaneliaDataStandards Public

    A pilot experiment to dissminate information about Janelia's biomaging data formats.

    JaneliaSciComp/JaneliaDataStandards’s past year of commit activity
    HTML 11 BSD-3-Clause 3 2 6 Updated Jan 24, 2025
  • nextflow-modules Public

    Nextflow modules for use with nf-core tooling

    JaneliaSciComp/nextflow-modules’s past year of commit activity
    Nextflow 0 BSD-3-Clause 0 0 0 Updated Jan 24, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…