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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 358 152

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 24 14

Repositories

Showing 10 of 422 repositories
  • npc_io Public

    File IO tools for MindScope Neuropixels projects in the cloud.

    AllenInstitute/npc_io’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 25, 2025
  • npc_sessions Public

    Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.

    AllenInstitute/npc_sessions’s past year of commit activity
    Python 2 1 53 (3 issues need help) 0 Updated Apr 25, 2025
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 26 9 297 11 Updated Apr 25, 2025
  • scrattch.vis Public

    scRNA-seq data visualization from scrattch

    AllenInstitute/scrattch.vis’s past year of commit activity
    R 26 2 7 0 Updated Apr 25, 2025
  • load_behavior_video Public

    First step in behavior video QC pipeline. Loads attached videos, saves gray frames in zarr file, saves metadata.

    AllenInstitute/load_behavior_video’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated Apr 24, 2025
  • txtox Public

    Experiments to relate gene expression and anatomical location

    AllenInstitute/txtox’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 24, 2025
  • jem Public

    Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.

    AllenInstitute/jem’s past year of commit activity
    HTML 3 3 0 0 Updated Apr 24, 2025
  • aibs-informatics-aws-lambda Public

    AWS Lambda library for AIBS Informatics lambda functions

    AllenInstitute/aibs-informatics-aws-lambda’s past year of commit activity
    Python 1 0 0 0 Updated Apr 24, 2025
  • aibs-informatics-core Public

    Core library to be used as foundation across multiple projects

    AllenInstitute/aibs-informatics-core’s past year of commit activity
    Python 2 0 0 2 Updated Apr 24, 2025
  • compute_motion_energy Public

    Step 2 of Behavior Video QC pipeline. Loads video Barr files and computes motion energy in 3d and

    AllenInstitute/compute_motion_energy’s past year of commit activity
    Jupyter Notebook 0 0 2 0 Updated Apr 24, 2025
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