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Cherry-pick 0.4.0 release related changes into 1deg_iaf #167

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merged 16 commits into from
Feb 19, 2025
Merged

Cherry-pick 0.4.0 release related changes into 1deg_iaf #167

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5a8e5bd
License file
anton-seaice Jan 21, 2025
1437598
Update incorrect note in MOM_override
anton-seaice Jan 21, 2025
621f59f
reorder MOM_input to follow MOM_parameter_doc, turn on FATAL_UNUSED_P…
anton-seaice Feb 7, 2025
e0b23c2
Remove unused components
anton-seaice Jan 31, 2025
624f552
Update to ACCESS-NRI/ACCESS-OM3 deployment 25.01.0
anton-seaice Jan 31, 2025
657adb6
Update field dictionary with latest from CMEPS
anton-seaice Dec 10, 2024
5151e00
add_gusts parameter needed for 0.4.0 build
anton-seaice Dec 13, 2024
b97a9dd
Update nuopc.runconfig to turn-off dates in restart_pointers
anton-seaice Dec 20, 2024
412a542
Turn on netcdf4 per https://github.com/COSIMA/access-om3/issues/81
anton-seaice Dec 20, 2024
e1a100b
Use .d and .m in CICE history output filenames
anton-seaice Dec 20, 2024
bcfefb2
Turn off extra cice restarts and remove non functioning write_restart…
anton-seaice Dec 20, 2024
1bc0c40
Use mom supergrid as cice grid file
anton-seaice Feb 3, 2025
3cc885b
Set Earth radius the same as the UM
anton-seaice Feb 6, 2025
240b86f
Add WIND_STAGGER to MOM_INPUT for clarity
anton-seaice Jan 20, 2025
9ebbf2e
Update MOM6 parameters and docs
dougiesquire Feb 18, 2025
0859d8d
Updated checksums as part of https://github.com/ACCESS-NRI/access-om3…
access-bot Feb 19, 2025
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396 changes: 396 additions & 0 deletions LICENSE
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1,654 changes: 602 additions & 1,052 deletions MOM_input
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7 changes: 2 additions & 5 deletions MOM_override
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@@ -1,5 +1,2 @@
! WARNING: DO NOT EDIT this file! Any user change made in this file will be
! overriden. This file is automatically generated. MOM6 parameter
! changes may be made via SourceMods or user_nl_mom.
!-------------------------------------------------------------------------

! NOTE: User made changes to this file override the settings in MOM_input
! This provides a clear record of how your configuration differs from the standard
5 changes: 2 additions & 3 deletions config.yaml
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Expand Up @@ -29,7 +29,6 @@ input:
- /g/data/vk83/configurations/inputs/access-om3/mom/grids/vertical/global.1deg/2023.07.28/ocean_vgrid.nc
- /g/data/vk83/configurations/inputs/access-om3/mom/initial_conditions/global.1deg/2020.10.22/ocean_temp_salt.res.nc
- /g/data/vk83/configurations/inputs/access-om3/mom/surface_salt_restoring/global.1deg/2020.05.30/salt_sfc_restore.nc
- /g/data/vk83/configurations/inputs/access-om3/cice/grids/global.1deg/2024.05.14/grid.nc
- /g/data/vk83/configurations/inputs/access-om3/cice/grids/global.1deg/2024.05.14/kmt.nc
- /g/data/vk83/configurations/inputs/access-om3/cice/initial_conditions/global.1deg/2023.07.28/iced.1900-01-01-10800.nc
- /g/data/qv56/replicas/input4MIPs/CMIP6/OMIP/MRI/MRI-JRA55-do-1-4-0
Expand All @@ -47,7 +46,7 @@ modules:
use:
- /g/data/vk83/modules
load:
- access-om3/2024.09.0
- access-om3/2025.01.0
- nco/5.0.5

payu_minimum_version: 1.1.4
payu_minimum_version: 1.1.6
2,425 changes: 2,425 additions & 0 deletions docs/MOM_parameter_doc.all
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88 changes: 88 additions & 0 deletions docs/MOM_parameter_doc.debugging
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! This file was written by the model and records the debugging parameters used at run-time.

! === module MOM_unit_scaling ===
! Parameters for doing unit scaling of variables.
Z_RESCALE_POWER = 0 ! default = 0
! An integer power of 2 that is used to rescale the model's internal units of
! depths and heights. Valid values range from -300 to 300.
L_RESCALE_POWER = 0 ! default = 0
! An integer power of 2 that is used to rescale the model's internal units of
! lateral distances. Valid values range from -300 to 300.
T_RESCALE_POWER = 0 ! default = 0
! An integer power of 2 that is used to rescale the model's internal units of
! time. Valid values range from -300 to 300.
R_RESCALE_POWER = 0 ! default = 0
! An integer power of 2 that is used to rescale the model's internal units of
! density. Valid values range from -300 to 300.
Q_RESCALE_POWER = 0 ! default = 0
! An integer power of 2 that is used to rescale the model's internal units of
! heat content. Valid values range from -300 to 300.
C_RESCALE_POWER = 0 ! default = 0
! An integer power of 2 that is used to rescale the model's internal units of
! temperature. Valid values range from -300 to 300.
S_RESCALE_POWER = 0 ! default = 0
! An integer power of 2 that is used to rescale the model's internal units of
! salinity. Valid values range from -300 to 300.

! === module MOM ===
VERBOSITY = 2 ! default = 2
! Integer controlling level of messaging
! 0 = Only FATAL messages
! 2 = Only FATAL, WARNING, NOTE [default]
! 9 = All)
DO_UNIT_TESTS = False ! [Boolean] default = False
! If True, exercises unit tests at model start up.
DEBUG = False ! [Boolean] default = False
! If true, write out verbose debugging data.
DEBUG_TRUNCATIONS = False ! [Boolean] default = False
! If true, calculate all diagnostics that are useful for debugging truncations.
ROTATE_INDEX = False ! [Boolean] default = False
! Enable rotation of the horizontal indices.
DEBUG_CHKSUMS = False ! [Boolean] default = False
! If true, checksums are performed on arrays in the various vec_chksum routines.
DEBUG_REDUNDANT = False ! [Boolean] default = False
! If true, debug redundant data points during calls to the various vec_chksum
! routines.

! === module MOM_verticalGrid ===
! Parameters providing information about the vertical grid.
H_RESCALE_POWER = 0 ! [nondim] default = 0
! An integer power of 2 that is used to rescale the model's intenal units of
! thickness. Valid values range from -300 to 300.

! === module MOM_vert_friction ===
U_TRUNC_FILE = "U_velocity_truncations" ! default = ""
! The absolute path to a file into which the accelerations leading to zonal
! velocity truncations are written. Undefine this for efficiency if this
! diagnostic is not needed.
V_TRUNC_FILE = "V_velocity_truncations" ! default = ""
! The absolute path to a file into which the accelerations leading to meridional
! velocity truncations are written. Undefine this for efficiency if this
! diagnostic is not needed.

! === module MOM_PointAccel ===
MAX_TRUNC_FILE_SIZE_PER_PE = 50 ! default = 50
! The maximum number of columns of truncations that any PE will write out during
! a run.
DEBUG_FULL_COLUMN = False ! [Boolean] default = False
! If true, write out the accelerations in all massive layers; otherwise just
! document the ones with large velocities.

! === module MOM_barotropic ===
DEBUG_BT = False ! [Boolean] default = False
! If true, write out verbose debugging data within the barotropic time-stepping
! loop. The data volume can be quite large if this is true.

! === module MOM_diabatic_driver ===
! The following parameters are used for diabatic processes.
DEBUG_CONSERVATION = False ! [Boolean] default = False
! If true, monitor conservation and extrema.
WRITE_TRACER_MIN_MAX = False ! [Boolean] default = False
! If true, write the maximum and minimum values of temperature, salinity and
! some tracer concentrations to stdout when the energy files are written.

! === module MOM_file_parser ===
REPORT_UNUSED_PARAMS = True ! [Boolean] default = True
! If true, report any parameter lines that are not used in the run.
FATAL_UNUSED_PARAMS = True ! [Boolean] default = False
! If true, kill the run if there are any unused parameters.
73 changes: 73 additions & 0 deletions docs/MOM_parameter_doc.layout
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! This file was written by the model and records the layout parameters used at run-time.

! === module MOM ===
GLOBAL_INDEXING = False ! [Boolean] default = False
! If true, use a global lateral indexing convention, so that corresponding
! points on different processors have the same index. This does not work with
! static memory.

! === module MOM_domains ===
!SYMMETRIC_MEMORY_ = True ! [Boolean]
! If defined, the velocity point data domain includes every face of the
! thickness points. In other words, some arrays are larger than others,
! depending on where they are on the staggered grid. Also, the starting index
! of the velocity-point arrays is usually 0, not 1. This can only be set at
! compile time.
NONBLOCKING_UPDATES = False ! [Boolean] default = False
! If true, non-blocking halo updates may be used.
THIN_HALO_UPDATES = True ! [Boolean] default = True
! If true, optional arguments may be used to specify the width of the halos that
! are updated with each call.
!STATIC_MEMORY_ = False ! [Boolean]
! If STATIC_MEMORY_ is defined, the principle variables will have sizes that are
! statically determined at compile time. Otherwise the sizes are not determined
! until run time. The STATIC option is substantially faster, but does not allow
! the PE count to be changed at run time. This can only be set at compile time.
AUTO_MASKTABLE = True ! [Boolean] default = False
! Turn on automatic mask table generation to eliminate land blocks.
MASKTABLE = "MOM_auto_mask_table" ! default = "MOM_mask_table"
! A text file to specify n_mask, layout and mask_list. This feature masks out
! processors that contain only land points. The first line of mask_table is the
! number of regions to be masked out. The second line is the layout of the model
! and must be consistent with the actual model layout. The following (n_mask)
! lines give the logical positions of the processors that are masked out. The
! mask_table can be created by tools like check_mask. The following example of
! mask_table masks out 2 processors, (1,2) and (3,6), out of the 24 in a 4x6
! layout:
! 2
! 4,6
! 1,2
! 3,6
NIPROC = 17 !
! The number of processors in the x-direction. With STATIC_MEMORY_ this is set
! in MOM_memory.h at compile time.
NJPROC = 14 !
! The number of processors in the y-direction. With STATIC_MEMORY_ this is set
! in MOM_memory.h at compile time.
LAYOUT = 17, 14 !
! The processor layout that was actually used.
AUTO_IO_LAYOUT_FAC = 0 ! default = 0
! When AUTO_MASKTABLE is enabled, io layout is calculated by performing integer
! division of the runtime-determined domain layout with this factor. If the
! factor is set to 0 (default), the io layout is set to 1,1.
IO_LAYOUT = 1, 1 !
! The processor layout to be used, or 0,0 to automatically set the io_layout to
! be the same as the layout.

! === module MOM_grid ===
! Parameters providing information about the lateral grid.
NIBLOCK = 1 ! default = 1
! The number of blocks in the x-direction on each processor (for openmp).
NJBLOCK = 1 ! default = 1
! The number of blocks in the y-direction on each processor (for openmp).

! === module MOM_barotropic ===
BT_USE_WIDE_HALOS = True ! [Boolean] default = True
! If true, use wide halos and march in during the barotropic time stepping for
! efficiency.
BTHALO = 0 ! default = 0
! The minimum halo size for the barotropic solver.
!BT x-halo = 4 !
! The barotropic x-halo size that is actually used.
!BT y-halo = 4 !
! The barotropic y-halo size that is actually used.
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