DESCRIPTION

Package: topGO
Type: Package
Title: Enrichment Analysis for Gene Ontology
Version: 2.41.0
Date: 2016-02-03
Author: Adrian Alexa, Jorg Rahnenfuhrer
Maintainer: Adrian Alexa <adrian.alexa@gmail.com>
Description: The topGO package provides tools for testing GO terms while
    accounting for the topology of the GO graph. Different test statistics
    and different methods for eliminating local similarities and dependencies
    between GO terms can be implemented and applied.
License: LGPL | file LICENSE
Depends:
    R (>= 2.10.0),
    graph (>= 1.14.0),
    methods
Imports:
    AnnotationDbi (>= 1.7.19),
    Biobase (>= 2.0.0),
    BiocGenerics (>= 0.13.6),
    DBI,
    ggplot2,
    GO.db (>= 2.3.0),
    lattice,
    matrixStats,
    SparseM (>= 0.73)
Suggests:
    ALL,
    genefilter,
    globaltest,
    hgu133a.db,
    hgu95av2.db,
    multtest,
    Rgraphviz,
    xtable
Collate:
    'AllClasses.R'
    'topGOmethods.R'
    'topGOgraph.R'
    'topGOalgo.R'
    'topGOfunctions.R'
    'topGOannotations.R'
    'topGOtests.R'
    'topGOviz.R'
    'plot_enrichment.R'
    'zzz.R'
biocViews: GO, GeneSetEnrichment, Microarray, Visualization