Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Helper wrapper script may be a problem when linking wrappers from multiple containers in one path #90

Open
jmtcsngr opened this issue Nov 28, 2023 · 0 comments

Comments

@jmtcsngr
Copy link
Member

All wrapper scripts rely on the colocated singularity-service-docker. Which means we cannot create links to the wrappers of multiple containers in one path. So if we have a container for samtools and one for irods clients, the structure would look like:

samtools/
└── bin
    ├── samtools
    ...
    └── singularity-service-docker
irods-clients/
└── bin
    ├── baton-chmod
    ...
    └── singularity-service-docker

So it would not be possible to link samtools/bin/* and irods-clients/bin/* in a single path. As the different singularity-service-docker, one from samtools and one from irods-clients, may not be compatible.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant