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pdb_hp_commands.sh
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#!/bin/bash
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1ebm.pdb -s OGG1_HUMAN > PDBDIR/1ebm_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1fn7.pdb -s OGG1_HUMAN > PDBDIR/1fn7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1hu0.pdb -s OGG1_HUMAN > PDBDIR/1hu0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1ko9.pdb -s OGG1_HUMAN > PDBDIR/1ko9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1lwv.pdb -s OGG1_HUMAN > PDBDIR/1lwv_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1lww.pdb -s OGG1_HUMAN > PDBDIR/1lww_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1lwy.pdb -s OGG1_HUMAN > PDBDIR/1lwy_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1m3h.pdb -s OGG1_HUMAN > PDBDIR/1m3h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1m3q.pdb -s OGG1_HUMAN > PDBDIR/1m3q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1n39.pdb -s OGG1_HUMAN > PDBDIR/1n39_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1n3a.pdb -s OGG1_HUMAN > PDBDIR/1n3a_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1n3c.pdb -s OGG1_HUMAN > PDBDIR/1n3c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1yqk.pdb -s OGG1_HUMAN > PDBDIR/1yqk_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1yql.pdb -s OGG1_HUMAN > PDBDIR/1yql_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1yqm.pdb -s OGG1_HUMAN > PDBDIR/1yqm_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/1yqr.pdb -s OGG1_HUMAN > PDBDIR/1yqr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/2i5w.pdb -s OGG1_HUMAN > PDBDIR/2i5w_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/2nob.pdb -s OGG1_HUMAN > PDBDIR/2nob_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/2noe.pdb -s OGG1_HUMAN > PDBDIR/2noe_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/2nof.pdb -s OGG1_HUMAN > PDBDIR/2nof_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/2noh.pdb -s OGG1_HUMAN > PDBDIR/2noh_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/2noi.pdb -s OGG1_HUMAN > PDBDIR/2noi_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/2nol.pdb -s OGG1_HUMAN > PDBDIR/2nol_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/2noz.pdb -s OGG1_HUMAN > PDBDIR/2noz_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/2xhi.pdb -s OGG1_HUMAN > PDBDIR/2xhi_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/3ih7.pdb -s OGG1_HUMAN > PDBDIR/3ih7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/3ktu.pdb -s OGG1_HUMAN > PDBDIR/3ktu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232812-232936-OGG1_HUMAN.aln -p PDBDIR/5an4.pdb -s OGG1_HUMAN > PDBDIR/5an4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/188223-188357-RS14_HUMAN.aln -p PDBDIR/4ug0.pdb -s RS14_HUMAN > PDBDIR/4ug0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/188223-188357-RS14_HUMAN.aln -p PDBDIR/4v6x.pdb -s RS14_HUMAN > PDBDIR/4v6x_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/188223-188357-RS14_HUMAN.aln -p PDBDIR/5a2q.pdb -s RS14_HUMAN > PDBDIR/5a2q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/188223-188357-RS14_HUMAN.aln -p PDBDIR/5aj0.pdb -s RS14_HUMAN > PDBDIR/5aj0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/188223-188357-RS14_HUMAN.aln -p PDBDIR/5flx.pdb -s RS14_HUMAN > PDBDIR/5flx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/188223-188357-RS14_HUMAN.aln -p PDBDIR/5lks.pdb -s RS14_HUMAN > PDBDIR/5lks_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/188223-188357-RS14_HUMAN.aln -p PDBDIR/5t2c.pdb -s RS14_HUMAN > PDBDIR/5t2c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/10543-11140-MSH2_HUMAN.aln -p PDBDIR/2o8b.pdb -s MSH2_HUMAN > PDBDIR/2o8b_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/10543-11140-MSH2_HUMAN.aln -p PDBDIR/2o8c.pdb -s MSH2_HUMAN > PDBDIR/2o8c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/10543-11140-MSH2_HUMAN.aln -p PDBDIR/2o8d.pdb -s MSH2_HUMAN > PDBDIR/2o8d_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/10543-11140-MSH2_HUMAN.aln -p PDBDIR/2o8e.pdb -s MSH2_HUMAN > PDBDIR/2o8e_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/10543-11140-MSH2_HUMAN.aln -p PDBDIR/2o8f.pdb -s MSH2_HUMAN > PDBDIR/2o8f_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/10543-11140-MSH2_HUMAN.aln -p PDBDIR/3thw.pdb -s MSH2_HUMAN > PDBDIR/3thw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/10543-11140-MSH2_HUMAN.aln -p PDBDIR/3thx.pdb -s MSH2_HUMAN > PDBDIR/3thx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/10543-11140-MSH2_HUMAN.aln -p PDBDIR/3thy.pdb -s MSH2_HUMAN > PDBDIR/3thy_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/10543-11140-MSH2_HUMAN.aln -p PDBDIR/3thz.pdb -s MSH2_HUMAN > PDBDIR/3thz_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/197955-198104-CTDSL_HUMAN.aln -p PDBDIR/2hhl.pdb -s CTDSL_HUMAN > PDBDIR/2hhl_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331497-331590-TAF10_HUMAN.aln -p PDBDIR/4wv4.pdb -s TAF10_HUMAN > PDBDIR/4wv4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/280739-280918-TGS1_HUMAN.aln -p PDBDIR/3egi.pdb -s TGS1_HUMAN > PDBDIR/3egi_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/280739-280918-TGS1_HUMAN.aln -p PDBDIR/3gdh.pdb -s TGS1_HUMAN > PDBDIR/3gdh_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/378133-378236-TPC6B_HUMAN.aln -p PDBDIR/2bjn.pdb -s TPC6B_HUMAN > PDBDIR/2bjn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/378133-378236-TPC6B_HUMAN.aln -p PDBDIR/2cfh.pdb -s TPC6B_HUMAN > PDBDIR/2cfh_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/378133-378236-TPC6B_HUMAN.aln -p PDBDIR/3kxc.pdb -s TPC6B_HUMAN > PDBDIR/3kxc_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/240407-240499-APC4_HUMAN.aln -p PDBDIR/4ui9.pdb -s APC4_HUMAN > PDBDIR/4ui9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/240407-240499-APC4_HUMAN.aln -p PDBDIR/5a31.pdb -s APC4_HUMAN > PDBDIR/5a31_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/240407-240499-APC4_HUMAN.aln -p PDBDIR/5bpw.pdb -s APC4_HUMAN > PDBDIR/5bpw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/240407-240499-APC4_HUMAN.aln -p PDBDIR/5g04.pdb -s APC4_HUMAN > PDBDIR/5g04_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/240407-240499-APC4_HUMAN.aln -p PDBDIR/5g05.pdb -s APC4_HUMAN > PDBDIR/5g05_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/240407-240499-APC4_HUMAN.aln -p PDBDIR/5khr.pdb -s APC4_HUMAN > PDBDIR/5khr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/240407-240499-APC4_HUMAN.aln -p PDBDIR/5khu.pdb -s APC4_HUMAN > PDBDIR/5khu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/240407-240499-APC4_HUMAN.aln -p PDBDIR/5l9t.pdb -s APC4_HUMAN > PDBDIR/5l9t_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/240407-240499-APC4_HUMAN.aln -p PDBDIR/5l9u.pdb -s APC4_HUMAN > PDBDIR/5l9u_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/240407-240499-APC4_HUMAN.aln -p PDBDIR/5lcw.pdb -s APC4_HUMAN > PDBDIR/5lcw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/349079-349400-WDR92_HUMAN.aln -p PDBDIR/3i2n.pdb -s WDR92_HUMAN > PDBDIR/3i2n_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/256531-256713-MVD1_HUMAN.aln -p PDBDIR/3d4j.pdb -s MVD1_HUMAN > PDBDIR/3d4j_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/1axc.pdb -s PCNA_HUMAN > PDBDIR/1axc_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/1u76.pdb -s PCNA_HUMAN > PDBDIR/1u76_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/1u7b.pdb -s PCNA_HUMAN > PDBDIR/1u7b_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/1ul1.pdb -s PCNA_HUMAN > PDBDIR/1ul1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/1vyj.pdb -s PCNA_HUMAN > PDBDIR/1vyj_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/1vym.pdb -s PCNA_HUMAN > PDBDIR/1vym_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/1w60.pdb -s PCNA_HUMAN > PDBDIR/1w60_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/2zvk.pdb -s PCNA_HUMAN > PDBDIR/2zvk_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/2zvl.pdb -s PCNA_HUMAN > PDBDIR/2zvl_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/2zvm.pdb -s PCNA_HUMAN > PDBDIR/2zvm_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/3ja9.pdb -s PCNA_HUMAN > PDBDIR/3ja9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/3p87.pdb -s PCNA_HUMAN > PDBDIR/3p87_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/3tbl.pdb -s PCNA_HUMAN > PDBDIR/3tbl_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/3vkx.pdb -s PCNA_HUMAN > PDBDIR/3vkx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/3wgw.pdb -s PCNA_HUMAN > PDBDIR/3wgw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/4d2g.pdb -s PCNA_HUMAN > PDBDIR/4d2g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/4rjf.pdb -s PCNA_HUMAN > PDBDIR/4rjf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/4ztd.pdb -s PCNA_HUMAN > PDBDIR/4ztd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/5e0t.pdb -s PCNA_HUMAN > PDBDIR/5e0t_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/5e0u.pdb -s PCNA_HUMAN > PDBDIR/5e0u_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/5e0v.pdb -s PCNA_HUMAN > PDBDIR/5e0v_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/5iy4.pdb -s PCNA_HUMAN > PDBDIR/5iy4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/5l7c.pdb -s PCNA_HUMAN > PDBDIR/5l7c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331802-332049-PCNA_HUMAN.aln -p PDBDIR/5mom.pdb -s PCNA_HUMAN > PDBDIR/5mom_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/151846-152200-PRP4_HUMAN.aln -p PDBDIR/3jcr.pdb -s PRP4_HUMAN > PDBDIR/3jcr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298023-298166-HDHD1_HUMAN.aln -p PDBDIR/3l5k.pdb -s HDHD1_HUMAN > PDBDIR/3l5k_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/254389-254606-CSN4_HUMAN.aln -p PDBDIR/4d0p.pdb -s CSN4_HUMAN > PDBDIR/4d0p_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/254389-254606-CSN4_HUMAN.aln -p PDBDIR/4d10.pdb -s CSN4_HUMAN > PDBDIR/4d10_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/254389-254606-CSN4_HUMAN.aln -p PDBDIR/4d18.pdb -s CSN4_HUMAN > PDBDIR/4d18_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/254389-254606-CSN4_HUMAN.aln -p PDBDIR/4wsn.pdb -s CSN4_HUMAN > PDBDIR/4wsn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/2j2c.pdb -s 5NTC_HUMAN > PDBDIR/2j2c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/2jc9.pdb -s 5NTC_HUMAN > PDBDIR/2jc9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/2jcm.pdb -s 5NTC_HUMAN > PDBDIR/2jcm_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/2xcv.pdb -s 5NTC_HUMAN > PDBDIR/2xcv_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/2xcw.pdb -s 5NTC_HUMAN > PDBDIR/2xcw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/2xcx.pdb -s 5NTC_HUMAN > PDBDIR/2xcx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/2xjb.pdb -s 5NTC_HUMAN > PDBDIR/2xjb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/2xjc.pdb -s 5NTC_HUMAN > PDBDIR/2xjc_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/2xjd.pdb -s 5NTC_HUMAN > PDBDIR/2xjd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/2xje.pdb -s 5NTC_HUMAN > PDBDIR/2xje_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/2xjf.pdb -s 5NTC_HUMAN > PDBDIR/2xjf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/4h4b.pdb -s 5NTC_HUMAN > PDBDIR/4h4b_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/5cqz.pdb -s 5NTC_HUMAN > PDBDIR/5cqz_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/5cr7.pdb -s 5NTC_HUMAN > PDBDIR/5cr7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/5k7y.pdb -s 5NTC_HUMAN > PDBDIR/5k7y_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/5l4z.pdb -s 5NTC_HUMAN > PDBDIR/5l4z_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/48219-48523-5NTC_HUMAN.aln -p PDBDIR/5l50.pdb -s 5NTC_HUMAN > PDBDIR/5l50_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/1dt9.pdb -s ERF1_HUMAN > PDBDIR/1dt9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/2hst.pdb -s ERF1_HUMAN > PDBDIR/2hst_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/2ktu.pdb -s ERF1_HUMAN > PDBDIR/2ktu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/2ktv.pdb -s ERF1_HUMAN > PDBDIR/2ktv_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/2lgt.pdb -s ERF1_HUMAN > PDBDIR/2lgt_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/2llx.pdb -s ERF1_HUMAN > PDBDIR/2llx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/2mq6.pdb -s ERF1_HUMAN > PDBDIR/2mq6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/2mq9.pdb -s ERF1_HUMAN > PDBDIR/2mq9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/3e1y.pdb -s ERF1_HUMAN > PDBDIR/3e1y_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/3j5y.pdb -s ERF1_HUMAN > PDBDIR/3j5y_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/3jag.pdb -s ERF1_HUMAN > PDBDIR/3jag_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/3jah.pdb -s ERF1_HUMAN > PDBDIR/3jah_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/3jai.pdb -s ERF1_HUMAN > PDBDIR/3jai_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/4d5n.pdb -s ERF1_HUMAN > PDBDIR/4d5n_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/4d61.pdb -s ERF1_HUMAN > PDBDIR/4d61_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/5a8l.pdb -s ERF1_HUMAN > PDBDIR/5a8l_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/5lzt.pdb -s ERF1_HUMAN > PDBDIR/5lzt_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/5lzu.pdb -s ERF1_HUMAN > PDBDIR/5lzu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298745-299159-ERF1_HUMAN.aln -p PDBDIR/5lzv.pdb -s ERF1_HUMAN > PDBDIR/5lzv_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/288590-288676-PTH2_HUMAN.aln -p PDBDIR/1q7s.pdb -s PTH2_HUMAN > PDBDIR/1q7s_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/366715-366849-COAC_HUMAN.aln -p PDBDIR/1qzu.pdb -s COAC_HUMAN > PDBDIR/1qzu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/163163-163455-GPT_HUMAN.aln -p PDBDIR/5lev.pdb -s GPT_HUMAN > PDBDIR/5lev_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/334558-334845-RBM22_HUMAN.aln -p PDBDIR/5mqf.pdb -s RBM22_HUMAN > PDBDIR/5mqf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/352670-352795-RPAB3_HUMAN.aln -p PDBDIR/2f3i.pdb -s RPAB3_HUMAN > PDBDIR/2f3i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/352670-352795-RPAB3_HUMAN.aln -p PDBDIR/5iy6.pdb -s RPAB3_HUMAN > PDBDIR/5iy6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/352670-352795-RPAB3_HUMAN.aln -p PDBDIR/5iy7.pdb -s RPAB3_HUMAN > PDBDIR/5iy7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/352670-352795-RPAB3_HUMAN.aln -p PDBDIR/5iy8.pdb -s RPAB3_HUMAN > PDBDIR/5iy8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/352670-352795-RPAB3_HUMAN.aln -p PDBDIR/5iy9.pdb -s RPAB3_HUMAN > PDBDIR/5iy9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/352670-352795-RPAB3_HUMAN.aln -p PDBDIR/5iya.pdb -s RPAB3_HUMAN > PDBDIR/5iya_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/352670-352795-RPAB3_HUMAN.aln -p PDBDIR/5iyb.pdb -s RPAB3_HUMAN > PDBDIR/5iyb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/352670-352795-RPAB3_HUMAN.aln -p PDBDIR/5iyc.pdb -s RPAB3_HUMAN > PDBDIR/5iyc_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/352670-352795-RPAB3_HUMAN.aln -p PDBDIR/5iyd.pdb -s RPAB3_HUMAN > PDBDIR/5iyd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/246564-246845-SNR40_HUMAN.aln -p PDBDIR/3jcr.pdb -s SNR40_HUMAN > PDBDIR/3jcr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/246564-246845-SNR40_HUMAN.aln -p PDBDIR/5mqf.pdb -s SNR40_HUMAN > PDBDIR/5mqf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/292976-293313-UBA3_HUMAN.aln -p PDBDIR/1r4m.pdb -s UBA3_HUMAN > PDBDIR/1r4m_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/292976-293313-UBA3_HUMAN.aln -p PDBDIR/1r4n.pdb -s UBA3_HUMAN > PDBDIR/1r4n_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/292976-293313-UBA3_HUMAN.aln -p PDBDIR/1tt5.pdb -s UBA3_HUMAN > PDBDIR/1tt5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/292976-293313-UBA3_HUMAN.aln -p PDBDIR/1yov.pdb -s UBA3_HUMAN > PDBDIR/1yov_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/292976-293313-UBA3_HUMAN.aln -p PDBDIR/2nvu.pdb -s UBA3_HUMAN > PDBDIR/2nvu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/292976-293313-UBA3_HUMAN.aln -p PDBDIR/3dbh.pdb -s UBA3_HUMAN > PDBDIR/3dbh_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/292976-293313-UBA3_HUMAN.aln -p PDBDIR/3dbl.pdb -s UBA3_HUMAN > PDBDIR/3dbl_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/292976-293313-UBA3_HUMAN.aln -p PDBDIR/3dbr.pdb -s UBA3_HUMAN > PDBDIR/3dbr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/292976-293313-UBA3_HUMAN.aln -p PDBDIR/3gzn.pdb -s UBA3_HUMAN > PDBDIR/3gzn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/355915-356043-SEH1_HUMAN.aln -p PDBDIR/5a9q.pdb -s SEH1_HUMAN > PDBDIR/5a9q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/390251-390338-ADX_HUMAN.aln -p PDBDIR/3n9y.pdb -s ADX_HUMAN > PDBDIR/3n9y_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/390251-390338-ADX_HUMAN.aln -p PDBDIR/3n9z.pdb -s ADX_HUMAN > PDBDIR/3n9z_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/390251-390338-ADX_HUMAN.aln -p PDBDIR/3na1.pdb -s ADX_HUMAN > PDBDIR/3na1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/390251-390338-ADX_HUMAN.aln -p PDBDIR/3p1m.pdb -s ADX_HUMAN > PDBDIR/3p1m_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/3iiw.pdb -s EED_HUMAN > PDBDIR/3iiw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/3iiy.pdb -s EED_HUMAN > PDBDIR/3iiy_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/3ij0.pdb -s EED_HUMAN > PDBDIR/3ij0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/3ij1.pdb -s EED_HUMAN > PDBDIR/3ij1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/3ijc.pdb -s EED_HUMAN > PDBDIR/3ijc_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/3jpx.pdb -s EED_HUMAN > PDBDIR/3jpx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/3jzg.pdb -s EED_HUMAN > PDBDIR/3jzg_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/3jzh.pdb -s EED_HUMAN > PDBDIR/3jzh_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/3jzn.pdb -s EED_HUMAN > PDBDIR/3jzn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/3k26.pdb -s EED_HUMAN > PDBDIR/3k26_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/3k27.pdb -s EED_HUMAN > PDBDIR/3k27_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/4x3e.pdb -s EED_HUMAN > PDBDIR/4x3e_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5gsa.pdb -s EED_HUMAN > PDBDIR/5gsa_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5h13.pdb -s EED_HUMAN > PDBDIR/5h13_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5h14.pdb -s EED_HUMAN > PDBDIR/5h14_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5h15.pdb -s EED_HUMAN > PDBDIR/5h15_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5h17.pdb -s EED_HUMAN > PDBDIR/5h17_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5h19.pdb -s EED_HUMAN > PDBDIR/5h19_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5h24.pdb -s EED_HUMAN > PDBDIR/5h24_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5h25.pdb -s EED_HUMAN > PDBDIR/5h25_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5hyn.pdb -s EED_HUMAN > PDBDIR/5hyn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5ij7.pdb -s EED_HUMAN > PDBDIR/5ij7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5ij8.pdb -s EED_HUMAN > PDBDIR/5ij8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5k0m.pdb -s EED_HUMAN > PDBDIR/5k0m_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5ls6.pdb -s EED_HUMAN > PDBDIR/5ls6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5ttw.pdb -s EED_HUMAN > PDBDIR/5ttw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5u5h.pdb -s EED_HUMAN > PDBDIR/5u5h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5u5k.pdb -s EED_HUMAN > PDBDIR/5u5k_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5u5t.pdb -s EED_HUMAN > PDBDIR/5u5t_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5u62.pdb -s EED_HUMAN > PDBDIR/5u62_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5u69.pdb -s EED_HUMAN > PDBDIR/5u69_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5u6d.pdb -s EED_HUMAN > PDBDIR/5u6d_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5u8a.pdb -s EED_HUMAN > PDBDIR/5u8a_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5u8f.pdb -s EED_HUMAN > PDBDIR/5u8f_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152201-152417-EED_HUMAN.aln -p PDBDIR/5wuk.pdb -s EED_HUMAN > PDBDIR/5wuk_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/297059-297164-NUCL_HUMAN.aln -p PDBDIR/2krr.pdb -s NUCL_HUMAN > PDBDIR/2krr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/4r3o.pdb -s PSA5_HUMAN > PDBDIR/4r3o_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/4r67.pdb -s PSA5_HUMAN > PDBDIR/4r67_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5a0q.pdb -s PSA5_HUMAN > PDBDIR/5a0q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5gjq.pdb -s PSA5_HUMAN > PDBDIR/5gjq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5gjr.pdb -s PSA5_HUMAN > PDBDIR/5gjr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5l4g.pdb -s PSA5_HUMAN > PDBDIR/5l4g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5le5.pdb -s PSA5_HUMAN > PDBDIR/5le5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5lex.pdb -s PSA5_HUMAN > PDBDIR/5lex_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5ley.pdb -s PSA5_HUMAN > PDBDIR/5ley_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5lez.pdb -s PSA5_HUMAN > PDBDIR/5lez_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5lf0.pdb -s PSA5_HUMAN > PDBDIR/5lf0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5lf1.pdb -s PSA5_HUMAN > PDBDIR/5lf1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5lf3.pdb -s PSA5_HUMAN > PDBDIR/5lf3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5lf4.pdb -s PSA5_HUMAN > PDBDIR/5lf4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5lf6.pdb -s PSA5_HUMAN > PDBDIR/5lf6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5lf7.pdb -s PSA5_HUMAN > PDBDIR/5lf7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5ln3.pdb -s PSA5_HUMAN > PDBDIR/5ln3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5t0c.pdb -s PSA5_HUMAN > PDBDIR/5t0c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5t0g.pdb -s PSA5_HUMAN > PDBDIR/5t0g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5t0h.pdb -s PSA5_HUMAN > PDBDIR/5t0h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5t0i.pdb -s PSA5_HUMAN > PDBDIR/5t0i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320124-320330-PSA5_HUMAN.aln -p PDBDIR/5t0j.pdb -s PSA5_HUMAN > PDBDIR/5t0j_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/362177-362374-PSMD8_HUMAN.aln -p PDBDIR/5gjq.pdb -s PSMD8_HUMAN > PDBDIR/5gjq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/362177-362374-PSMD8_HUMAN.aln -p PDBDIR/5gjr.pdb -s PSMD8_HUMAN > PDBDIR/5gjr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/362177-362374-PSMD8_HUMAN.aln -p PDBDIR/5l4k.pdb -s PSMD8_HUMAN > PDBDIR/5l4k_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/362177-362374-PSMD8_HUMAN.aln -p PDBDIR/5ln3.pdb -s PSMD8_HUMAN > PDBDIR/5ln3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/362177-362374-PSMD8_HUMAN.aln -p PDBDIR/5t0c.pdb -s PSMD8_HUMAN > PDBDIR/5t0c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/362177-362374-PSMD8_HUMAN.aln -p PDBDIR/5t0g.pdb -s PSMD8_HUMAN > PDBDIR/5t0g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/362177-362374-PSMD8_HUMAN.aln -p PDBDIR/5t0h.pdb -s PSMD8_HUMAN > PDBDIR/5t0h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/362177-362374-PSMD8_HUMAN.aln -p PDBDIR/5t0i.pdb -s PSMD8_HUMAN > PDBDIR/5t0i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/362177-362374-PSMD8_HUMAN.aln -p PDBDIR/5t0j.pdb -s PSMD8_HUMAN > PDBDIR/5t0j_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/8460-9046-SMCA4_HUMAN.aln -p PDBDIR/2grc.pdb -s SMCA4_HUMAN > PDBDIR/2grc_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/8460-9046-SMCA4_HUMAN.aln -p PDBDIR/2h60.pdb -s SMCA4_HUMAN > PDBDIR/2h60_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/8460-9046-SMCA4_HUMAN.aln -p PDBDIR/3uvd.pdb -s SMCA4_HUMAN > PDBDIR/3uvd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/8460-9046-SMCA4_HUMAN.aln -p PDBDIR/5dkd.pdb -s SMCA4_HUMAN > PDBDIR/5dkd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/8460-9046-SMCA4_HUMAN.aln -p PDBDIR/5ea1.pdb -s SMCA4_HUMAN > PDBDIR/5ea1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/321638-321727-PIHD1_HUMAN.aln -p PDBDIR/4psf.pdb -s PIHD1_HUMAN > PDBDIR/4psf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/321638-321727-PIHD1_HUMAN.aln -p PDBDIR/4psi.pdb -s PIHD1_HUMAN > PDBDIR/4psi_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/1yx4.pdb -s PSMD4_HUMAN > PDBDIR/1yx4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/1yx5.pdb -s PSMD4_HUMAN > PDBDIR/1yx5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/1yx6.pdb -s PSMD4_HUMAN > PDBDIR/1yx6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/2kde.pdb -s PSMD4_HUMAN > PDBDIR/2kde_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/2kdf.pdb -s PSMD4_HUMAN > PDBDIR/2kdf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/5gjq.pdb -s PSMD4_HUMAN > PDBDIR/5gjq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/5gjr.pdb -s PSMD4_HUMAN > PDBDIR/5gjr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/5l4k.pdb -s PSMD4_HUMAN > PDBDIR/5l4k_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/5ln3.pdb -s PSMD4_HUMAN > PDBDIR/5ln3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/5t0c.pdb -s PSMD4_HUMAN > PDBDIR/5t0c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/5t0g.pdb -s PSMD4_HUMAN > PDBDIR/5t0g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/5t0h.pdb -s PSMD4_HUMAN > PDBDIR/5t0h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/5t0i.pdb -s PSMD4_HUMAN > PDBDIR/5t0i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/241901-242151-PSMD4_HUMAN.aln -p PDBDIR/5t0j.pdb -s PSMD4_HUMAN > PDBDIR/5t0j_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/176799-176982-PDCD4_HUMAN.aln -p PDBDIR/2ggf.pdb -s PDCD4_HUMAN > PDBDIR/2ggf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/176799-176982-PDCD4_HUMAN.aln -p PDBDIR/2kzt.pdb -s PDCD4_HUMAN > PDBDIR/2kzt_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/176799-176982-PDCD4_HUMAN.aln -p PDBDIR/2rg8.pdb -s PDCD4_HUMAN > PDBDIR/2rg8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/176799-176982-PDCD4_HUMAN.aln -p PDBDIR/2zu6.pdb -s PDCD4_HUMAN > PDBDIR/2zu6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/176799-176982-PDCD4_HUMAN.aln -p PDBDIR/3eij.pdb -s PDCD4_HUMAN > PDBDIR/3eij_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202402-202495-ALR_HUMAN.aln -p PDBDIR/3mbg.pdb -s ALR_HUMAN > PDBDIR/3mbg_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202402-202495-ALR_HUMAN.aln -p PDBDIR/3o55.pdb -s ALR_HUMAN > PDBDIR/3o55_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202402-202495-ALR_HUMAN.aln -p PDBDIR/3tk0.pdb -s ALR_HUMAN > PDBDIR/3tk0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202402-202495-ALR_HUMAN.aln -p PDBDIR/3u2l.pdb -s ALR_HUMAN > PDBDIR/3u2l_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202402-202495-ALR_HUMAN.aln -p PDBDIR/3u2m.pdb -s ALR_HUMAN > PDBDIR/3u2m_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202402-202495-ALR_HUMAN.aln -p PDBDIR/3u5s.pdb -s ALR_HUMAN > PDBDIR/3u5s_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202402-202495-ALR_HUMAN.aln -p PDBDIR/4ldk.pdb -s ALR_HUMAN > PDBDIR/4ldk_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/306706-306849-ERCC1_HUMAN.aln -p PDBDIR/2a1i.pdb -s ERCC1_HUMAN > PDBDIR/2a1i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/306706-306849-ERCC1_HUMAN.aln -p PDBDIR/2jnw.pdb -s ERCC1_HUMAN > PDBDIR/2jnw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/306706-306849-ERCC1_HUMAN.aln -p PDBDIR/2jpd.pdb -s ERCC1_HUMAN > PDBDIR/2jpd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/102021-102269-CRYL1_HUMAN.aln -p PDBDIR/3f3s.pdb -s CRYL1_HUMAN > PDBDIR/3f3s_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/383972-384105-PDC10_HUMAN.aln -p PDBDIR/3ajm.pdb -s PDC10_HUMAN > PDBDIR/3ajm_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/383972-384105-PDC10_HUMAN.aln -p PDBDIR/3l8i.pdb -s PDC10_HUMAN > PDBDIR/3l8i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/383972-384105-PDC10_HUMAN.aln -p PDBDIR/3l8j.pdb -s PDC10_HUMAN > PDBDIR/3l8j_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/383972-384105-PDC10_HUMAN.aln -p PDBDIR/3rqe.pdb -s PDC10_HUMAN > PDBDIR/3rqe_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/383972-384105-PDC10_HUMAN.aln -p PDBDIR/3rqf.pdb -s PDC10_HUMAN > PDBDIR/3rqf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/383972-384105-PDC10_HUMAN.aln -p PDBDIR/3rqg.pdb -s PDC10_HUMAN > PDBDIR/3rqg_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/383972-384105-PDC10_HUMAN.aln -p PDBDIR/3w8h.pdb -s PDC10_HUMAN > PDBDIR/3w8h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/383972-384105-PDC10_HUMAN.aln -p PDBDIR/3w8i.pdb -s PDC10_HUMAN > PDBDIR/3w8i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/383972-384105-PDC10_HUMAN.aln -p PDBDIR/4geh.pdb -s PDC10_HUMAN > PDBDIR/4geh_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/383972-384105-PDC10_HUMAN.aln -p PDBDIR/4tvq.pdb -s PDC10_HUMAN > PDBDIR/4tvq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/179154-179410-RS4X_HUMAN.aln -p PDBDIR/4ug0.pdb -s RS4X_HUMAN > PDBDIR/4ug0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/179154-179410-RS4X_HUMAN.aln -p PDBDIR/4v6x.pdb -s RS4X_HUMAN > PDBDIR/4v6x_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/179154-179410-RS4X_HUMAN.aln -p PDBDIR/5a2q.pdb -s RS4X_HUMAN > PDBDIR/5a2q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/179154-179410-RS4X_HUMAN.aln -p PDBDIR/5lks.pdb -s RS4X_HUMAN > PDBDIR/5lks_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/179154-179410-RS4X_HUMAN.aln -p PDBDIR/5t2c.pdb -s RS4X_HUMAN > PDBDIR/5t2c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/134041-134287-PRI2_HUMAN.aln -p PDBDIR/3l9q.pdb -s PRI2_HUMAN > PDBDIR/3l9q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/134041-134287-PRI2_HUMAN.aln -p PDBDIR/3q36.pdb -s PRI2_HUMAN > PDBDIR/3q36_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/134041-134287-PRI2_HUMAN.aln -p PDBDIR/4bpu.pdb -s PRI2_HUMAN > PDBDIR/4bpu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/134041-134287-PRI2_HUMAN.aln -p PDBDIR/4bpw.pdb -s PRI2_HUMAN > PDBDIR/4bpw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/134041-134287-PRI2_HUMAN.aln -p PDBDIR/4bpx.pdb -s PRI2_HUMAN > PDBDIR/4bpx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/134041-134287-PRI2_HUMAN.aln -p PDBDIR/4rr2.pdb -s PRI2_HUMAN > PDBDIR/4rr2_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/134041-134287-PRI2_HUMAN.aln -p PDBDIR/5dqo.pdb -s PRI2_HUMAN > PDBDIR/5dqo_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/134041-134287-PRI2_HUMAN.aln -p PDBDIR/5exr.pdb -s PRI2_HUMAN > PDBDIR/5exr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/134041-134287-PRI2_HUMAN.aln -p PDBDIR/5f0q.pdb -s PRI2_HUMAN > PDBDIR/5f0q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/134041-134287-PRI2_HUMAN.aln -p PDBDIR/5f0s.pdb -s PRI2_HUMAN > PDBDIR/5f0s_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/134041-134287-PRI2_HUMAN.aln -p PDBDIR/5i7m.pdb -s PRI2_HUMAN > PDBDIR/5i7m_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/312918-313028-UBXN7_HUMAN.aln -p PDBDIR/1wj4.pdb -s UBXN7_HUMAN > PDBDIR/1wj4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/312918-313028-UBXN7_HUMAN.aln -p PDBDIR/2dlx.pdb -s UBXN7_HUMAN > PDBDIR/2dlx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/12580-12969-ERF3A_HUMAN.aln -p PDBDIR/3e1y.pdb -s ERF3A_HUMAN > PDBDIR/3e1y_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/12580-12969-ERF3A_HUMAN.aln -p PDBDIR/3j5y.pdb -s ERF3A_HUMAN > PDBDIR/3j5y_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/12580-12969-ERF3A_HUMAN.aln -p PDBDIR/4d61.pdb -s ERF3A_HUMAN > PDBDIR/4d61_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/12580-12969-ERF3A_HUMAN.aln -p PDBDIR/5hxb.pdb -s ERF3A_HUMAN > PDBDIR/5hxb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/12580-12969-ERF3A_HUMAN.aln -p PDBDIR/5lzt.pdb -s ERF3A_HUMAN > PDBDIR/5lzt_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/56680-57080-PDC6I_HUMAN.aln -p PDBDIR/2oev.pdb -s PDC6I_HUMAN > PDBDIR/2oev_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/56680-57080-PDC6I_HUMAN.aln -p PDBDIR/2oew.pdb -s PDC6I_HUMAN > PDBDIR/2oew_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/56680-57080-PDC6I_HUMAN.aln -p PDBDIR/2oex.pdb -s PDC6I_HUMAN > PDBDIR/2oex_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/56680-57080-PDC6I_HUMAN.aln -p PDBDIR/2ojq.pdb -s PDC6I_HUMAN > PDBDIR/2ojq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/56680-57080-PDC6I_HUMAN.aln -p PDBDIR/2r02.pdb -s PDC6I_HUMAN > PDBDIR/2r02_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/56680-57080-PDC6I_HUMAN.aln -p PDBDIR/2r03.pdb -s PDC6I_HUMAN > PDBDIR/2r03_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/56680-57080-PDC6I_HUMAN.aln -p PDBDIR/2r05.pdb -s PDC6I_HUMAN > PDBDIR/2r05_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/56680-57080-PDC6I_HUMAN.aln -p PDBDIR/2xs1.pdb -s PDC6I_HUMAN > PDBDIR/2xs1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/56680-57080-PDC6I_HUMAN.aln -p PDBDIR/2xs8.pdb -s PDC6I_HUMAN > PDBDIR/2xs8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/56680-57080-PDC6I_HUMAN.aln -p PDBDIR/3c3o.pdb -s PDC6I_HUMAN > PDBDIR/3c3o_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/56680-57080-PDC6I_HUMAN.aln -p PDBDIR/3c3q.pdb -s PDC6I_HUMAN > PDBDIR/3c3q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/56680-57080-PDC6I_HUMAN.aln -p PDBDIR/3c3r.pdb -s PDC6I_HUMAN > PDBDIR/3c3r_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/56680-57080-PDC6I_HUMAN.aln -p PDBDIR/4jjy.pdb -s PDC6I_HUMAN > PDBDIR/4jjy_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/307095-307278-OTUB1_HUMAN.aln -p PDBDIR/2zfy.pdb -s OTUB1_HUMAN > PDBDIR/2zfy_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/307095-307278-OTUB1_HUMAN.aln -p PDBDIR/3von.pdb -s OTUB1_HUMAN > PDBDIR/3von_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/307095-307278-OTUB1_HUMAN.aln -p PDBDIR/4ddg.pdb -s OTUB1_HUMAN > PDBDIR/4ddg_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/307095-307278-OTUB1_HUMAN.aln -p PDBDIR/4ddi.pdb -s OTUB1_HUMAN > PDBDIR/4ddi_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/307095-307278-OTUB1_HUMAN.aln -p PDBDIR/4i6l.pdb -s OTUB1_HUMAN > PDBDIR/4i6l_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/330772-330881-RL30_HUMAN.aln -p PDBDIR/3vi6.pdb -s RL30_HUMAN > PDBDIR/3vi6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/330772-330881-RL30_HUMAN.aln -p PDBDIR/4ug0.pdb -s RL30_HUMAN > PDBDIR/4ug0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/330772-330881-RL30_HUMAN.aln -p PDBDIR/4v6x.pdb -s RL30_HUMAN > PDBDIR/4v6x_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/330772-330881-RL30_HUMAN.aln -p PDBDIR/5aj0.pdb -s RL30_HUMAN > PDBDIR/5aj0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/330772-330881-RL30_HUMAN.aln -p PDBDIR/5lks.pdb -s RL30_HUMAN > PDBDIR/5lks_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/330772-330881-RL30_HUMAN.aln -p PDBDIR/5t2c.pdb -s RL30_HUMAN > PDBDIR/5t2c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/364379-364512-EXOS6_HUMAN.aln -p PDBDIR/2nn6.pdb -s EXOS6_HUMAN > PDBDIR/2nn6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/290948-291099-NU107_HUMAN.aln -p PDBDIR/3cqc.pdb -s NU107_HUMAN > PDBDIR/3cqc_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/290948-291099-NU107_HUMAN.aln -p PDBDIR/3cqg.pdb -s NU107_HUMAN > PDBDIR/3cqg_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/290948-291099-NU107_HUMAN.aln -p PDBDIR/3i4r.pdb -s NU107_HUMAN > PDBDIR/3i4r_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/290948-291099-NU107_HUMAN.aln -p PDBDIR/5a9q.pdb -s NU107_HUMAN > PDBDIR/5a9q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/347483-347600-FDX2_HUMAN.aln -p PDBDIR/2y5c.pdb -s FDX2_HUMAN > PDBDIR/2y5c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/188358-188558-RL15_HUMAN.aln -p PDBDIR/4ug0.pdb -s RL15_HUMAN > PDBDIR/4ug0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/188358-188558-RL15_HUMAN.aln -p PDBDIR/4v6x.pdb -s RL15_HUMAN > PDBDIR/4v6x_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/188358-188558-RL15_HUMAN.aln -p PDBDIR/5aj0.pdb -s RL15_HUMAN > PDBDIR/5aj0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/188358-188558-RL15_HUMAN.aln -p PDBDIR/5lks.pdb -s RL15_HUMAN > PDBDIR/5lks_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/188358-188558-RL15_HUMAN.aln -p PDBDIR/5t2c.pdb -s RL15_HUMAN > PDBDIR/5t2c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268092-268248-SYWM_HUMAN.aln -p PDBDIR/5ekd.pdb -s SYWM_HUMAN > PDBDIR/5ekd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327189-327305-SLD5_HUMAN.aln -p PDBDIR/2e9x.pdb -s SLD5_HUMAN > PDBDIR/2e9x_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327189-327305-SLD5_HUMAN.aln -p PDBDIR/2eho.pdb -s SLD5_HUMAN > PDBDIR/2eho_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327189-327305-SLD5_HUMAN.aln -p PDBDIR/2q9q.pdb -s SLD5_HUMAN > PDBDIR/2q9q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/389220-389312-PIN4_HUMAN.aln -p PDBDIR/1fjd.pdb -s PIN4_HUMAN > PDBDIR/1fjd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/68293-68475-ARL2_HUMAN.aln -p PDBDIR/3doe.pdb -s ARL2_HUMAN > PDBDIR/3doe_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/68293-68475-ARL2_HUMAN.aln -p PDBDIR/3dof.pdb -s ARL2_HUMAN > PDBDIR/3dof_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/252710-252829-CCNH_HUMAN.aln -p PDBDIR/1jkw.pdb -s CCNH_HUMAN > PDBDIR/1jkw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/252710-252829-CCNH_HUMAN.aln -p PDBDIR/1kxu.pdb -s CCNH_HUMAN > PDBDIR/1kxu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/1bix.pdb -s APEX1_HUMAN > PDBDIR/1bix_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/1de8.pdb -s APEX1_HUMAN > PDBDIR/1de8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/1de9.pdb -s APEX1_HUMAN > PDBDIR/1de9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/1dew.pdb -s APEX1_HUMAN > PDBDIR/1dew_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/1e9n.pdb -s APEX1_HUMAN > PDBDIR/1e9n_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/1hd7.pdb -s APEX1_HUMAN > PDBDIR/1hd7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/2isi.pdb -s APEX1_HUMAN > PDBDIR/2isi_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/2o3h.pdb -s APEX1_HUMAN > PDBDIR/2o3h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/3u8u.pdb -s APEX1_HUMAN > PDBDIR/3u8u_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/4iem.pdb -s APEX1_HUMAN > PDBDIR/4iem_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/4lnd.pdb -s APEX1_HUMAN > PDBDIR/4lnd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/4qh9.pdb -s APEX1_HUMAN > PDBDIR/4qh9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/4qhd.pdb -s APEX1_HUMAN > PDBDIR/4qhd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/4qhe.pdb -s APEX1_HUMAN > PDBDIR/4qhe_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/5cfg.pdb -s APEX1_HUMAN > PDBDIR/5cfg_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/5dff.pdb -s APEX1_HUMAN > PDBDIR/5dff_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/5dfh.pdb -s APEX1_HUMAN > PDBDIR/5dfh_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/5dfi.pdb -s APEX1_HUMAN > PDBDIR/5dfi_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/5dfj.pdb -s APEX1_HUMAN > PDBDIR/5dfj_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/164279-164472-APEX1_HUMAN.aln -p PDBDIR/5dg0.pdb -s APEX1_HUMAN > PDBDIR/5dg0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/206377-206538-CDC27_HUMAN.aln -p PDBDIR/4rg6.pdb -s CDC27_HUMAN > PDBDIR/4rg6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/206377-206538-CDC27_HUMAN.aln -p PDBDIR/4rg7.pdb -s CDC27_HUMAN > PDBDIR/4rg7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/206377-206538-CDC27_HUMAN.aln -p PDBDIR/4rg9.pdb -s CDC27_HUMAN > PDBDIR/4rg9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/206377-206538-CDC27_HUMAN.aln -p PDBDIR/4ui9.pdb -s CDC27_HUMAN > PDBDIR/4ui9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/206377-206538-CDC27_HUMAN.aln -p PDBDIR/5a31.pdb -s CDC27_HUMAN > PDBDIR/5a31_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/206377-206538-CDC27_HUMAN.aln -p PDBDIR/5g04.pdb -s CDC27_HUMAN > PDBDIR/5g04_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/206377-206538-CDC27_HUMAN.aln -p PDBDIR/5g05.pdb -s CDC27_HUMAN > PDBDIR/5g05_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/206377-206538-CDC27_HUMAN.aln -p PDBDIR/5khr.pdb -s CDC27_HUMAN > PDBDIR/5khr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/206377-206538-CDC27_HUMAN.aln -p PDBDIR/5khu.pdb -s CDC27_HUMAN > PDBDIR/5khu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/206377-206538-CDC27_HUMAN.aln -p PDBDIR/5l9t.pdb -s CDC27_HUMAN > PDBDIR/5l9t_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/206377-206538-CDC27_HUMAN.aln -p PDBDIR/5l9u.pdb -s CDC27_HUMAN > PDBDIR/5l9u_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/206377-206538-CDC27_HUMAN.aln -p PDBDIR/5lcw.pdb -s CDC27_HUMAN > PDBDIR/5lcw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/179891-180015-EXOS8_HUMAN.aln -p PDBDIR/2nn6.pdb -s EXOS8_HUMAN > PDBDIR/2nn6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/298167-298311-SPF27_HUMAN.aln -p PDBDIR/5mqf.pdb -s SPF27_HUMAN > PDBDIR/5mqf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/4r3o.pdb -s PSA3_HUMAN > PDBDIR/4r3o_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/4r67.pdb -s PSA3_HUMAN > PDBDIR/4r67_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5a0q.pdb -s PSA3_HUMAN > PDBDIR/5a0q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5dsv.pdb -s PSA3_HUMAN > PDBDIR/5dsv_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5gjq.pdb -s PSA3_HUMAN > PDBDIR/5gjq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5gjr.pdb -s PSA3_HUMAN > PDBDIR/5gjr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5l4g.pdb -s PSA3_HUMAN > PDBDIR/5l4g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5le5.pdb -s PSA3_HUMAN > PDBDIR/5le5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5lex.pdb -s PSA3_HUMAN > PDBDIR/5lex_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5ley.pdb -s PSA3_HUMAN > PDBDIR/5ley_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5lez.pdb -s PSA3_HUMAN > PDBDIR/5lez_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5lf0.pdb -s PSA3_HUMAN > PDBDIR/5lf0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5lf1.pdb -s PSA3_HUMAN > PDBDIR/5lf1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5lf3.pdb -s PSA3_HUMAN > PDBDIR/5lf3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5lf4.pdb -s PSA3_HUMAN > PDBDIR/5lf4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5lf6.pdb -s PSA3_HUMAN > PDBDIR/5lf6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5lf7.pdb -s PSA3_HUMAN > PDBDIR/5lf7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5ln3.pdb -s PSA3_HUMAN > PDBDIR/5ln3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5t0c.pdb -s PSA3_HUMAN > PDBDIR/5t0c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5t0g.pdb -s PSA3_HUMAN > PDBDIR/5t0g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5t0h.pdb -s PSA3_HUMAN > PDBDIR/5t0h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5t0i.pdb -s PSA3_HUMAN > PDBDIR/5t0i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/263259-263494-PSA3_HUMAN.aln -p PDBDIR/5t0j.pdb -s PSA3_HUMAN > PDBDIR/5t0j_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/328988-329091-STRAA_HUMAN.aln -p PDBDIR/2wtk.pdb -s STRAA_HUMAN > PDBDIR/2wtk_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/328988-329091-STRAA_HUMAN.aln -p PDBDIR/3gni.pdb -s STRAA_HUMAN > PDBDIR/3gni_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/253195-253437-BECN1_HUMAN.aln -p PDBDIR/4ddp.pdb -s BECN1_HUMAN > PDBDIR/4ddp_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/197316-197534-VPS36_HUMAN.aln -p PDBDIR/2hth.pdb -s VPS36_HUMAN > PDBDIR/2hth_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/197316-197534-VPS36_HUMAN.aln -p PDBDIR/2zme.pdb -s VPS36_HUMAN > PDBDIR/2zme_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/197316-197534-VPS36_HUMAN.aln -p PDBDIR/3cuq.pdb -s VPS36_HUMAN > PDBDIR/3cuq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/114267-114441-CSN3_HUMAN.aln -p PDBDIR/4d10.pdb -s CSN3_HUMAN > PDBDIR/4d10_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/114267-114441-CSN3_HUMAN.aln -p PDBDIR/4d18.pdb -s CSN3_HUMAN > PDBDIR/4d18_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/114267-114441-CSN3_HUMAN.aln -p PDBDIR/4wsn.pdb -s CSN3_HUMAN > PDBDIR/4wsn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327306-327478-VPS29_HUMAN.aln -p PDBDIR/1w24.pdb -s VPS29_HUMAN > PDBDIR/1w24_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327306-327478-VPS29_HUMAN.aln -p PDBDIR/2r17.pdb -s VPS29_HUMAN > PDBDIR/2r17_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327306-327478-VPS29_HUMAN.aln -p PDBDIR/5gtu.pdb -s VPS29_HUMAN > PDBDIR/5gtu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/316983-317109-T2EA_HUMAN.aln -p PDBDIR/2jtx.pdb -s T2EA_HUMAN > PDBDIR/2jtx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/316983-317109-T2EA_HUMAN.aln -p PDBDIR/5gpy.pdb -s T2EA_HUMAN > PDBDIR/5gpy_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/316983-317109-T2EA_HUMAN.aln -p PDBDIR/5iy6.pdb -s T2EA_HUMAN > PDBDIR/5iy6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/316983-317109-T2EA_HUMAN.aln -p PDBDIR/5iy7.pdb -s T2EA_HUMAN > PDBDIR/5iy7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/316983-317109-T2EA_HUMAN.aln -p PDBDIR/5iy8.pdb -s T2EA_HUMAN > PDBDIR/5iy8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/316983-317109-T2EA_HUMAN.aln -p PDBDIR/5iy9.pdb -s T2EA_HUMAN > PDBDIR/5iy9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/316983-317109-T2EA_HUMAN.aln -p PDBDIR/5iya.pdb -s T2EA_HUMAN > PDBDIR/5iya_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/316983-317109-T2EA_HUMAN.aln -p PDBDIR/5iyb.pdb -s T2EA_HUMAN > PDBDIR/5iyb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/316983-317109-T2EA_HUMAN.aln -p PDBDIR/5iyc.pdb -s T2EA_HUMAN > PDBDIR/5iyc_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/316983-317109-T2EA_HUMAN.aln -p PDBDIR/5iyd.pdb -s T2EA_HUMAN > PDBDIR/5iyd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/304660-304823-SC22B_HUMAN.aln -p PDBDIR/2nup.pdb -s SC22B_HUMAN > PDBDIR/2nup_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/304660-304823-SC22B_HUMAN.aln -p PDBDIR/2nut.pdb -s SC22B_HUMAN > PDBDIR/2nut_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/304660-304823-SC22B_HUMAN.aln -p PDBDIR/3egd.pdb -s SC22B_HUMAN > PDBDIR/3egd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/304660-304823-SC22B_HUMAN.aln -p PDBDIR/3egx.pdb -s SC22B_HUMAN > PDBDIR/3egx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/369803-369954-HIKES_HUMAN.aln -p PDBDIR/3wvz.pdb -s HIKES_HUMAN > PDBDIR/3wvz_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/369803-369954-HIKES_HUMAN.aln -p PDBDIR/3ww0.pdb -s HIKES_HUMAN > PDBDIR/3ww0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/342949-343092-PUS10_HUMAN.aln -p PDBDIR/2v9k.pdb -s PUS10_HUMAN > PDBDIR/2v9k_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/266053-266150-GMFG_HUMAN.aln -p PDBDIR/3l50.pdb -s GMFG_HUMAN > PDBDIR/3l50_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/204404-204721-PRPF3_HUMAN.aln -p PDBDIR/3jcr.pdb -s PRPF3_HUMAN > PDBDIR/3jcr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/238053-238147-LSM7_HUMAN.aln -p PDBDIR/3jcr.pdb -s LSM7_HUMAN > PDBDIR/3jcr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327479-327606-UBE2T_HUMAN.aln -p PDBDIR/1yh2.pdb -s UBE2T_HUMAN > PDBDIR/1yh2_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327479-327606-UBE2T_HUMAN.aln -p PDBDIR/4ccg.pdb -s UBE2T_HUMAN > PDBDIR/4ccg_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327479-327606-UBE2T_HUMAN.aln -p PDBDIR/5ngz.pdb -s UBE2T_HUMAN > PDBDIR/5ngz_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/209095-209465-PSD12_HUMAN.aln -p PDBDIR/5gjq.pdb -s PSD12_HUMAN > PDBDIR/5gjq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/209095-209465-PSD12_HUMAN.aln -p PDBDIR/5gjr.pdb -s PSD12_HUMAN > PDBDIR/5gjr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/209095-209465-PSD12_HUMAN.aln -p PDBDIR/5l4k.pdb -s PSD12_HUMAN > PDBDIR/5l4k_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/209095-209465-PSD12_HUMAN.aln -p PDBDIR/5ln3.pdb -s PSD12_HUMAN > PDBDIR/5ln3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/209095-209465-PSD12_HUMAN.aln -p PDBDIR/5t0c.pdb -s PSD12_HUMAN > PDBDIR/5t0c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/209095-209465-PSD12_HUMAN.aln -p PDBDIR/5t0g.pdb -s PSD12_HUMAN > PDBDIR/5t0g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/209095-209465-PSD12_HUMAN.aln -p PDBDIR/5t0h.pdb -s PSD12_HUMAN > PDBDIR/5t0h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/209095-209465-PSD12_HUMAN.aln -p PDBDIR/5t0i.pdb -s PSD12_HUMAN > PDBDIR/5t0i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/209095-209465-PSD12_HUMAN.aln -p PDBDIR/5t0j.pdb -s PSD12_HUMAN > PDBDIR/5t0j_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320419-320598-NIP7_HUMAN.aln -p PDBDIR/1sqw.pdb -s NIP7_HUMAN > PDBDIR/1sqw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320419-320598-NIP7_HUMAN.aln -p PDBDIR/1t5y.pdb -s NIP7_HUMAN > PDBDIR/1t5y_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/242420-242583-UFC1_HUMAN.aln -p PDBDIR/2k07.pdb -s UFC1_HUMAN > PDBDIR/2k07_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/242420-242583-UFC1_HUMAN.aln -p PDBDIR/2z6o.pdb -s UFC1_HUMAN > PDBDIR/2z6o_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/242420-242583-UFC1_HUMAN.aln -p PDBDIR/2z6p.pdb -s UFC1_HUMAN > PDBDIR/2z6p_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/242420-242583-UFC1_HUMAN.aln -p PDBDIR/3evx.pdb -s UFC1_HUMAN > PDBDIR/3evx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/187273-187461-RL13_HUMAN.aln -p PDBDIR/4ug0.pdb -s RL13_HUMAN > PDBDIR/4ug0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/187273-187461-RL13_HUMAN.aln -p PDBDIR/4v6x.pdb -s RL13_HUMAN > PDBDIR/4v6x_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/187273-187461-RL13_HUMAN.aln -p PDBDIR/5aj0.pdb -s RL13_HUMAN > PDBDIR/5aj0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/187273-187461-RL13_HUMAN.aln -p PDBDIR/5lks.pdb -s RL13_HUMAN > PDBDIR/5lks_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/187273-187461-RL13_HUMAN.aln -p PDBDIR/5t2c.pdb -s RL13_HUMAN > PDBDIR/5t2c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/1f8a.pdb -s PIN1_HUMAN > PDBDIR/1f8a_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/1nmv.pdb -s PIN1_HUMAN > PDBDIR/1nmv_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/1nmw.pdb -s PIN1_HUMAN > PDBDIR/1nmw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/1pin.pdb -s PIN1_HUMAN > PDBDIR/1pin_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/1zcn.pdb -s PIN1_HUMAN > PDBDIR/1zcn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2f21.pdb -s PIN1_HUMAN > PDBDIR/2f21_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2itk.pdb -s PIN1_HUMAN > PDBDIR/2itk_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2q5a.pdb -s PIN1_HUMAN > PDBDIR/2q5a_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2ruc.pdb -s PIN1_HUMAN > PDBDIR/2ruc_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2rud.pdb -s PIN1_HUMAN > PDBDIR/2rud_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2ruq.pdb -s PIN1_HUMAN > PDBDIR/2ruq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2rur.pdb -s PIN1_HUMAN > PDBDIR/2rur_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2xp3.pdb -s PIN1_HUMAN > PDBDIR/2xp3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2xp4.pdb -s PIN1_HUMAN > PDBDIR/2xp4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2xp5.pdb -s PIN1_HUMAN > PDBDIR/2xp5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2xp6.pdb -s PIN1_HUMAN > PDBDIR/2xp6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2xp7.pdb -s PIN1_HUMAN > PDBDIR/2xp7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2xp8.pdb -s PIN1_HUMAN > PDBDIR/2xp8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2xp9.pdb -s PIN1_HUMAN > PDBDIR/2xp9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2xpa.pdb -s PIN1_HUMAN > PDBDIR/2xpa_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2xpb.pdb -s PIN1_HUMAN > PDBDIR/2xpb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2zqs.pdb -s PIN1_HUMAN > PDBDIR/2zqs_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2zqt.pdb -s PIN1_HUMAN > PDBDIR/2zqt_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2zqu.pdb -s PIN1_HUMAN > PDBDIR/2zqu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2zqv.pdb -s PIN1_HUMAN > PDBDIR/2zqv_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2zr4.pdb -s PIN1_HUMAN > PDBDIR/2zr4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2zr5.pdb -s PIN1_HUMAN > PDBDIR/2zr5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/2zr6.pdb -s PIN1_HUMAN > PDBDIR/2zr6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3i6c.pdb -s PIN1_HUMAN > PDBDIR/3i6c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3ik8.pdb -s PIN1_HUMAN > PDBDIR/3ik8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3ikd.pdb -s PIN1_HUMAN > PDBDIR/3ikd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3ikg.pdb -s PIN1_HUMAN > PDBDIR/3ikg_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3jyj.pdb -s PIN1_HUMAN > PDBDIR/3jyj_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3kab.pdb -s PIN1_HUMAN > PDBDIR/3kab_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3kac.pdb -s PIN1_HUMAN > PDBDIR/3kac_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3kad.pdb -s PIN1_HUMAN > PDBDIR/3kad_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3kaf.pdb -s PIN1_HUMAN > PDBDIR/3kaf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3kag.pdb -s PIN1_HUMAN > PDBDIR/3kag_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3kah.pdb -s PIN1_HUMAN > PDBDIR/3kah_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3kai.pdb -s PIN1_HUMAN > PDBDIR/3kai_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3kce.pdb -s PIN1_HUMAN > PDBDIR/3kce_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3ntp.pdb -s PIN1_HUMAN > PDBDIR/3ntp_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3odk.pdb -s PIN1_HUMAN > PDBDIR/3odk_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3oob.pdb -s PIN1_HUMAN > PDBDIR/3oob_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3tc5.pdb -s PIN1_HUMAN > PDBDIR/3tc5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3tcz.pdb -s PIN1_HUMAN > PDBDIR/3tcz_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3tdb.pdb -s PIN1_HUMAN > PDBDIR/3tdb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/3wh0.pdb -s PIN1_HUMAN > PDBDIR/3wh0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/4qib.pdb -s PIN1_HUMAN > PDBDIR/4qib_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/4tns.pdb -s PIN1_HUMAN > PDBDIR/4tns_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/4tyo.pdb -s PIN1_HUMAN > PDBDIR/4tyo_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/4u84.pdb -s PIN1_HUMAN > PDBDIR/4u84_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/4u85.pdb -s PIN1_HUMAN > PDBDIR/4u85_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/4u86.pdb -s PIN1_HUMAN > PDBDIR/4u86_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273306-273435-PIN1_HUMAN.aln -p PDBDIR/5uy9.pdb -s PIN1_HUMAN > PDBDIR/5uy9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/251340-251496-RTF1_HUMAN.aln -p PDBDIR/2bze.pdb -s RTF1_HUMAN > PDBDIR/2bze_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/251340-251496-RTF1_HUMAN.aln -p PDBDIR/2db9.pdb -s RTF1_HUMAN > PDBDIR/2db9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/251340-251496-RTF1_HUMAN.aln -p PDBDIR/3u1u.pdb -s RTF1_HUMAN > PDBDIR/3u1u_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/251340-251496-RTF1_HUMAN.aln -p PDBDIR/4l1p.pdb -s RTF1_HUMAN > PDBDIR/4l1p_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/251340-251496-RTF1_HUMAN.aln -p PDBDIR/4l1u.pdb -s RTF1_HUMAN > PDBDIR/4l1u_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/207915-208135-DPOA2_HUMAN.aln -p PDBDIR/4y97.pdb -s DPOA2_HUMAN > PDBDIR/4y97_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/207915-208135-DPOA2_HUMAN.aln -p PDBDIR/5exr.pdb -s DPOA2_HUMAN > PDBDIR/5exr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/5278-5512-DDX6_HUMAN.aln -p PDBDIR/1vec.pdb -s DDX6_HUMAN > PDBDIR/1vec_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/5278-5512-DDX6_HUMAN.aln -p PDBDIR/2wax.pdb -s DDX6_HUMAN > PDBDIR/2wax_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/5278-5512-DDX6_HUMAN.aln -p PDBDIR/2way.pdb -s DDX6_HUMAN > PDBDIR/2way_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/5278-5512-DDX6_HUMAN.aln -p PDBDIR/4crw.pdb -s DDX6_HUMAN > PDBDIR/4crw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/5278-5512-DDX6_HUMAN.aln -p PDBDIR/4ct4.pdb -s DDX6_HUMAN > PDBDIR/4ct4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/5278-5512-DDX6_HUMAN.aln -p PDBDIR/4ct5.pdb -s DDX6_HUMAN > PDBDIR/4ct5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/5278-5512-DDX6_HUMAN.aln -p PDBDIR/5anr.pdb -s DDX6_HUMAN > PDBDIR/5anr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/259318-259512-PNCB_HUMAN.aln -p PDBDIR/4yub.pdb -s PNCB_HUMAN > PDBDIR/4yub_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/215179-215551-NU205_HUMAN.aln -p PDBDIR/5ijn.pdb -s NU205_HUMAN > PDBDIR/5ijn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/215179-215551-NU205_HUMAN.aln -p PDBDIR/5ijo.pdb -s NU205_HUMAN > PDBDIR/5ijo_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/278869-279127-CNOT9_HUMAN.aln -p PDBDIR/2fv2.pdb -s CNOT9_HUMAN > PDBDIR/2fv2_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/278869-279127-CNOT9_HUMAN.aln -p PDBDIR/4cru.pdb -s CNOT9_HUMAN > PDBDIR/4cru_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/278869-279127-CNOT9_HUMAN.aln -p PDBDIR/4crv.pdb -s CNOT9_HUMAN > PDBDIR/4crv_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/278869-279127-CNOT9_HUMAN.aln -p PDBDIR/4ct6.pdb -s CNOT9_HUMAN > PDBDIR/4ct6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/278869-279127-CNOT9_HUMAN.aln -p PDBDIR/4ct7.pdb -s CNOT9_HUMAN > PDBDIR/4ct7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/278869-279127-CNOT9_HUMAN.aln -p PDBDIR/5lsw.pdb -s CNOT9_HUMAN > PDBDIR/5lsw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/157610-157809-PTPA_HUMAN.aln -p PDBDIR/2g62.pdb -s PTPA_HUMAN > PDBDIR/2g62_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/157610-157809-PTPA_HUMAN.aln -p PDBDIR/2hv6.pdb -s PTPA_HUMAN > PDBDIR/2hv6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/157610-157809-PTPA_HUMAN.aln -p PDBDIR/2hv7.pdb -s PTPA_HUMAN > PDBDIR/2hv7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/157610-157809-PTPA_HUMAN.aln -p PDBDIR/2ixm.pdb -s PTPA_HUMAN > PDBDIR/2ixm_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/157610-157809-PTPA_HUMAN.aln -p PDBDIR/4lac.pdb -s PTPA_HUMAN > PDBDIR/4lac_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/157610-157809-PTPA_HUMAN.aln -p PDBDIR/4ny3.pdb -s PTPA_HUMAN > PDBDIR/4ny3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/362757-362843-PAR16_HUMAN.aln -p PDBDIR/4f0d.pdb -s PAR16_HUMAN > PDBDIR/4f0d_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/283172-283378-INP5E_HUMAN.aln -p PDBDIR/2xsw.pdb -s INP5E_HUMAN > PDBDIR/2xsw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/382409-382516-DCTN6_HUMAN.aln -p PDBDIR/3tv0.pdb -s DCTN6_HUMAN > PDBDIR/3tv0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/77823-78160-RAD50_HUMAN.aln -p PDBDIR/5gox.pdb -s RAD50_HUMAN > PDBDIR/5gox_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/398384-398484-COMD9_HUMAN.aln -p PDBDIR/4nkn.pdb -s COMD9_HUMAN > PDBDIR/4nkn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/398384-398484-COMD9_HUMAN.aln -p PDBDIR/4oe9.pdb -s COMD9_HUMAN > PDBDIR/4oe9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/175393-175477-RM04_HUMAN.aln -p PDBDIR/3j7y.pdb -s RM04_HUMAN > PDBDIR/3j7y_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/175393-175477-RM04_HUMAN.aln -p PDBDIR/3j9m.pdb -s RM04_HUMAN > PDBDIR/3j9m_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/225022-225392-GCDH_HUMAN.aln -p PDBDIR/1siq.pdb -s GCDH_HUMAN > PDBDIR/1siq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/225022-225392-GCDH_HUMAN.aln -p PDBDIR/1sir.pdb -s GCDH_HUMAN > PDBDIR/1sir_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/225022-225392-GCDH_HUMAN.aln -p PDBDIR/2r0m.pdb -s GCDH_HUMAN > PDBDIR/2r0m_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/225022-225392-GCDH_HUMAN.aln -p PDBDIR/2r0n.pdb -s GCDH_HUMAN > PDBDIR/2r0n_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268249-268369-APC10_HUMAN.aln -p PDBDIR/1jhj.pdb -s APC10_HUMAN > PDBDIR/1jhj_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268249-268369-APC10_HUMAN.aln -p PDBDIR/4ui9.pdb -s APC10_HUMAN > PDBDIR/4ui9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268249-268369-APC10_HUMAN.aln -p PDBDIR/5a31.pdb -s APC10_HUMAN > PDBDIR/5a31_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268249-268369-APC10_HUMAN.aln -p PDBDIR/5g04.pdb -s APC10_HUMAN > PDBDIR/5g04_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268249-268369-APC10_HUMAN.aln -p PDBDIR/5g05.pdb -s APC10_HUMAN > PDBDIR/5g05_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268249-268369-APC10_HUMAN.aln -p PDBDIR/5khr.pdb -s APC10_HUMAN > PDBDIR/5khr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268249-268369-APC10_HUMAN.aln -p PDBDIR/5khu.pdb -s APC10_HUMAN > PDBDIR/5khu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268249-268369-APC10_HUMAN.aln -p PDBDIR/5l9t.pdb -s APC10_HUMAN > PDBDIR/5l9t_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268249-268369-APC10_HUMAN.aln -p PDBDIR/5l9u.pdb -s APC10_HUMAN > PDBDIR/5l9u_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268249-268369-APC10_HUMAN.aln -p PDBDIR/5lcw.pdb -s APC10_HUMAN > PDBDIR/5lcw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/91248-91460-EXO1_HUMAN.aln -p PDBDIR/3qe9.pdb -s EXO1_HUMAN > PDBDIR/3qe9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/91248-91460-EXO1_HUMAN.aln -p PDBDIR/3qea.pdb -s EXO1_HUMAN > PDBDIR/3qea_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/91248-91460-EXO1_HUMAN.aln -p PDBDIR/3qeb.pdb -s EXO1_HUMAN > PDBDIR/3qeb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/335418-335532-SGF29_HUMAN.aln -p PDBDIR/3lx7.pdb -s SGF29_HUMAN > PDBDIR/3lx7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/335418-335532-SGF29_HUMAN.aln -p PDBDIR/3me9.pdb -s SGF29_HUMAN > PDBDIR/3me9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/335418-335532-SGF29_HUMAN.aln -p PDBDIR/3mea.pdb -s SGF29_HUMAN > PDBDIR/3mea_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/335418-335532-SGF29_HUMAN.aln -p PDBDIR/3met.pdb -s SGF29_HUMAN > PDBDIR/3met_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/335418-335532-SGF29_HUMAN.aln -p PDBDIR/3meu.pdb -s SGF29_HUMAN > PDBDIR/3meu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/335418-335532-SGF29_HUMAN.aln -p PDBDIR/3mev.pdb -s SGF29_HUMAN > PDBDIR/3mev_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/335418-335532-SGF29_HUMAN.aln -p PDBDIR/3mew.pdb -s SGF29_HUMAN > PDBDIR/3mew_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/335418-335532-SGF29_HUMAN.aln -p PDBDIR/5c0m.pdb -s SGF29_HUMAN > PDBDIR/5c0m_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/152731-153007-GCP4_HUMAN.aln -p PDBDIR/3rip.pdb -s GCP4_HUMAN > PDBDIR/3rip_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/29245-29579-SMBP2_HUMAN.aln -p PDBDIR/4b3f.pdb -s SMBP2_HUMAN > PDBDIR/4b3f_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/29245-29579-SMBP2_HUMAN.aln -p PDBDIR/4b3g.pdb -s SMBP2_HUMAN > PDBDIR/4b3g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/38771-39055-NU155_HUMAN.aln -p PDBDIR/5a9q.pdb -s NU155_HUMAN > PDBDIR/5a9q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/38771-39055-NU155_HUMAN.aln -p PDBDIR/5ijn.pdb -s NU155_HUMAN > PDBDIR/5ijn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/38771-39055-NU155_HUMAN.aln -p PDBDIR/5ijo.pdb -s NU155_HUMAN > PDBDIR/5ijo_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/213637-213847-TRIP4_HUMAN.aln -p PDBDIR/2e5o.pdb -s TRIP4_HUMAN > PDBDIR/2e5o_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/191984-192185-XRCC5_HUMAN.aln -p PDBDIR/1jeq.pdb -s XRCC5_HUMAN > PDBDIR/1jeq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/191984-192185-XRCC5_HUMAN.aln -p PDBDIR/1jey.pdb -s XRCC5_HUMAN > PDBDIR/1jey_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/191984-192185-XRCC5_HUMAN.aln -p PDBDIR/1q2z.pdb -s XRCC5_HUMAN > PDBDIR/1q2z_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/191984-192185-XRCC5_HUMAN.aln -p PDBDIR/1rw2.pdb -s XRCC5_HUMAN > PDBDIR/1rw2_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/270648-270740-RM03_HUMAN.aln -p PDBDIR/3j7y.pdb -s RM03_HUMAN > PDBDIR/3j7y_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/270648-270740-RM03_HUMAN.aln -p PDBDIR/3j9m.pdb -s RM03_HUMAN > PDBDIR/3j9m_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/332623-332740-EXOS5_HUMAN.aln -p PDBDIR/2nn6.pdb -s EXOS5_HUMAN > PDBDIR/2nn6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/297538-297664-APT_HUMAN.aln -p PDBDIR/1opu.pdb -s APT_HUMAN > PDBDIR/1opu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/297538-297664-APT_HUMAN.aln -p PDBDIR/1ore.pdb -s APT_HUMAN > PDBDIR/1ore_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/297538-297664-APT_HUMAN.aln -p PDBDIR/1zn7.pdb -s APT_HUMAN > PDBDIR/1zn7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/297538-297664-APT_HUMAN.aln -p PDBDIR/1zn8.pdb -s APT_HUMAN > PDBDIR/1zn8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/297538-297664-APT_HUMAN.aln -p PDBDIR/1zn9.pdb -s APT_HUMAN > PDBDIR/1zn9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/297538-297664-APT_HUMAN.aln -p PDBDIR/4x44.pdb -s APT_HUMAN > PDBDIR/4x44_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/297538-297664-APT_HUMAN.aln -p PDBDIR/4x45.pdb -s APT_HUMAN > PDBDIR/4x45_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/111898-112736-SYLC_HUMAN.aln -p PDBDIR/2wfd.pdb -s SYLC_HUMAN > PDBDIR/2wfd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/4r3o.pdb -s PSA6_HUMAN > PDBDIR/4r3o_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/4r67.pdb -s PSA6_HUMAN > PDBDIR/4r67_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5a0q.pdb -s PSA6_HUMAN > PDBDIR/5a0q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5gjq.pdb -s PSA6_HUMAN > PDBDIR/5gjq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5gjr.pdb -s PSA6_HUMAN > PDBDIR/5gjr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5l4g.pdb -s PSA6_HUMAN > PDBDIR/5l4g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5le5.pdb -s PSA6_HUMAN > PDBDIR/5le5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5lex.pdb -s PSA6_HUMAN > PDBDIR/5lex_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5ley.pdb -s PSA6_HUMAN > PDBDIR/5ley_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5lez.pdb -s PSA6_HUMAN > PDBDIR/5lez_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5lf0.pdb -s PSA6_HUMAN > PDBDIR/5lf0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5lf1.pdb -s PSA6_HUMAN > PDBDIR/5lf1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5lf3.pdb -s PSA6_HUMAN > PDBDIR/5lf3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5lf4.pdb -s PSA6_HUMAN > PDBDIR/5lf4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5lf6.pdb -s PSA6_HUMAN > PDBDIR/5lf6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5lf7.pdb -s PSA6_HUMAN > PDBDIR/5lf7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5ln3.pdb -s PSA6_HUMAN > PDBDIR/5ln3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5t0c.pdb -s PSA6_HUMAN > PDBDIR/5t0c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5t0g.pdb -s PSA6_HUMAN > PDBDIR/5t0g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5t0h.pdb -s PSA6_HUMAN > PDBDIR/5t0h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5t0i.pdb -s PSA6_HUMAN > PDBDIR/5t0i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268370-268605-PSA6_HUMAN.aln -p PDBDIR/5t0j.pdb -s PSA6_HUMAN > PDBDIR/5t0j_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202698-202854-PEX5_HUMAN.aln -p PDBDIR/1fch.pdb -s PEX5_HUMAN > PDBDIR/1fch_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202698-202854-PEX5_HUMAN.aln -p PDBDIR/2c0l.pdb -s PEX5_HUMAN > PDBDIR/2c0l_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202698-202854-PEX5_HUMAN.aln -p PDBDIR/2c0m.pdb -s PEX5_HUMAN > PDBDIR/2c0m_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202698-202854-PEX5_HUMAN.aln -p PDBDIR/2j9q.pdb -s PEX5_HUMAN > PDBDIR/2j9q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202698-202854-PEX5_HUMAN.aln -p PDBDIR/3r9a.pdb -s PEX5_HUMAN > PDBDIR/3r9a_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202698-202854-PEX5_HUMAN.aln -p PDBDIR/4kxk.pdb -s PEX5_HUMAN > PDBDIR/4kxk_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/202698-202854-PEX5_HUMAN.aln -p PDBDIR/4kyo.pdb -s PEX5_HUMAN > PDBDIR/4kyo_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/396645-396730-BOLA1_HUMAN.aln -p PDBDIR/5lci.pdb -s BOLA1_HUMAN > PDBDIR/5lci_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/233809-234403-CDC5L_HUMAN.aln -p PDBDIR/5mqf.pdb -s CDC5L_HUMAN > PDBDIR/5mqf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327086-327188-MDC1_HUMAN.aln -p PDBDIR/2ado.pdb -s MDC1_HUMAN > PDBDIR/2ado_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327086-327188-MDC1_HUMAN.aln -p PDBDIR/2azm.pdb -s MDC1_HUMAN > PDBDIR/2azm_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327086-327188-MDC1_HUMAN.aln -p PDBDIR/2etx.pdb -s MDC1_HUMAN > PDBDIR/2etx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327086-327188-MDC1_HUMAN.aln -p PDBDIR/3k05.pdb -s MDC1_HUMAN > PDBDIR/3k05_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327086-327188-MDC1_HUMAN.aln -p PDBDIR/3umz.pdb -s MDC1_HUMAN > PDBDIR/3umz_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327086-327188-MDC1_HUMAN.aln -p PDBDIR/3un0.pdb -s MDC1_HUMAN > PDBDIR/3un0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327086-327188-MDC1_HUMAN.aln -p PDBDIR/3unm.pdb -s MDC1_HUMAN > PDBDIR/3unm_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327086-327188-MDC1_HUMAN.aln -p PDBDIR/3unn.pdb -s MDC1_HUMAN > PDBDIR/3unn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/327086-327188-MDC1_HUMAN.aln -p PDBDIR/3uot.pdb -s MDC1_HUMAN > PDBDIR/3uot_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/4r3o.pdb -s PSA4_HUMAN > PDBDIR/4r3o_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/4r67.pdb -s PSA4_HUMAN > PDBDIR/4r67_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5a0q.pdb -s PSA4_HUMAN > PDBDIR/5a0q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5gjq.pdb -s PSA4_HUMAN > PDBDIR/5gjq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5gjr.pdb -s PSA4_HUMAN > PDBDIR/5gjr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5l4g.pdb -s PSA4_HUMAN > PDBDIR/5l4g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5le5.pdb -s PSA4_HUMAN > PDBDIR/5le5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5lex.pdb -s PSA4_HUMAN > PDBDIR/5lex_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5ley.pdb -s PSA4_HUMAN > PDBDIR/5ley_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5lez.pdb -s PSA4_HUMAN > PDBDIR/5lez_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5lf0.pdb -s PSA4_HUMAN > PDBDIR/5lf0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5lf1.pdb -s PSA4_HUMAN > PDBDIR/5lf1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5lf3.pdb -s PSA4_HUMAN > PDBDIR/5lf3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5lf4.pdb -s PSA4_HUMAN > PDBDIR/5lf4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5lf6.pdb -s PSA4_HUMAN > PDBDIR/5lf6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5lf7.pdb -s PSA4_HUMAN > PDBDIR/5lf7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5ln3.pdb -s PSA4_HUMAN > PDBDIR/5ln3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5t0c.pdb -s PSA4_HUMAN > PDBDIR/5t0c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5t0g.pdb -s PSA4_HUMAN > PDBDIR/5t0g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5t0h.pdb -s PSA4_HUMAN > PDBDIR/5t0h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5t0i.pdb -s PSA4_HUMAN > PDBDIR/5t0i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/331022-331241-PSA4_HUMAN.aln -p PDBDIR/5t0j.pdb -s PSA4_HUMAN > PDBDIR/5t0j_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/28266-28928-ENPL_HUMAN.aln -p PDBDIR/4nh9.pdb -s ENPL_HUMAN > PDBDIR/4nh9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/320793-320884-ARAP2_HUMAN.aln -p PDBDIR/2cod.pdb -s ARAP2_HUMAN > PDBDIR/2cod_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/144066-144305-SF01_HUMAN.aln -p PDBDIR/1k1g.pdb -s SF01_HUMAN > PDBDIR/1k1g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/144066-144305-SF01_HUMAN.aln -p PDBDIR/2m09.pdb -s SF01_HUMAN > PDBDIR/2m09_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/144066-144305-SF01_HUMAN.aln -p PDBDIR/2m0g.pdb -s SF01_HUMAN > PDBDIR/2m0g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/144066-144305-SF01_HUMAN.aln -p PDBDIR/4fxw.pdb -s SF01_HUMAN > PDBDIR/4fxw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/144066-144305-SF01_HUMAN.aln -p PDBDIR/4fxx.pdb -s SF01_HUMAN > PDBDIR/4fxx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/84299-84542-DECR_HUMAN.aln -p PDBDIR/1w6u.pdb -s DECR_HUMAN > PDBDIR/1w6u_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/84299-84542-DECR_HUMAN.aln -p PDBDIR/1w73.pdb -s DECR_HUMAN > PDBDIR/1w73_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/84299-84542-DECR_HUMAN.aln -p PDBDIR/1w8d.pdb -s DECR_HUMAN > PDBDIR/1w8d_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/291271-291681-SNW1_HUMAN.aln -p PDBDIR/5mqf.pdb -s SNW1_HUMAN > PDBDIR/5mqf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/212687-212789-AF10_HUMAN.aln -p PDBDIR/5dag.pdb -s AF10_HUMAN > PDBDIR/5dag_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/212687-212789-AF10_HUMAN.aln -p PDBDIR/5dah.pdb -s AF10_HUMAN > PDBDIR/5dah_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/100362-101306-SF3B1_HUMAN.aln -p PDBDIR/5ife.pdb -s SF3B1_HUMAN > PDBDIR/5ife_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/185362-185739-NUP93_HUMAN.aln -p PDBDIR/5ijn.pdb -s NUP93_HUMAN > PDBDIR/5ijn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/185362-185739-NUP93_HUMAN.aln -p PDBDIR/5ijo.pdb -s NUP93_HUMAN > PDBDIR/5ijo_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/198318-198582-PSD13_HUMAN.aln -p PDBDIR/5gjq.pdb -s PSD13_HUMAN > PDBDIR/5gjq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/198318-198582-PSD13_HUMAN.aln -p PDBDIR/5gjr.pdb -s PSD13_HUMAN > PDBDIR/5gjr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/198318-198582-PSD13_HUMAN.aln -p PDBDIR/5l4k.pdb -s PSD13_HUMAN > PDBDIR/5l4k_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/198318-198582-PSD13_HUMAN.aln -p PDBDIR/5ln3.pdb -s PSD13_HUMAN > PDBDIR/5ln3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/198318-198582-PSD13_HUMAN.aln -p PDBDIR/5t0c.pdb -s PSD13_HUMAN > PDBDIR/5t0c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/198318-198582-PSD13_HUMAN.aln -p PDBDIR/5t0g.pdb -s PSD13_HUMAN > PDBDIR/5t0g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/198318-198582-PSD13_HUMAN.aln -p PDBDIR/5t0h.pdb -s PSD13_HUMAN > PDBDIR/5t0h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/198318-198582-PSD13_HUMAN.aln -p PDBDIR/5t0i.pdb -s PSD13_HUMAN > PDBDIR/5t0i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/198318-198582-PSD13_HUMAN.aln -p PDBDIR/5t0j.pdb -s PSD13_HUMAN > PDBDIR/5t0j_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/322862-322998-MTHFS_HUMAN.aln -p PDBDIR/3hxt.pdb -s MTHFS_HUMAN > PDBDIR/3hxt_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/322862-322998-MTHFS_HUMAN.aln -p PDBDIR/3hy3.pdb -s MTHFS_HUMAN > PDBDIR/3hy3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/322862-322998-MTHFS_HUMAN.aln -p PDBDIR/3hy4.pdb -s MTHFS_HUMAN > PDBDIR/3hy4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/322862-322998-MTHFS_HUMAN.aln -p PDBDIR/3hy6.pdb -s MTHFS_HUMAN > PDBDIR/3hy6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/4r3o.pdb -s PSB6_HUMAN > PDBDIR/4r3o_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/4r67.pdb -s PSB6_HUMAN > PDBDIR/4r67_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5a0q.pdb -s PSB6_HUMAN > PDBDIR/5a0q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5gjq.pdb -s PSB6_HUMAN > PDBDIR/5gjq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5gjr.pdb -s PSB6_HUMAN > PDBDIR/5gjr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5l4g.pdb -s PSB6_HUMAN > PDBDIR/5l4g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5le5.pdb -s PSB6_HUMAN > PDBDIR/5le5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5lex.pdb -s PSB6_HUMAN > PDBDIR/5lex_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5ley.pdb -s PSB6_HUMAN > PDBDIR/5ley_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5lez.pdb -s PSB6_HUMAN > PDBDIR/5lez_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5lf0.pdb -s PSB6_HUMAN > PDBDIR/5lf0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5lf1.pdb -s PSB6_HUMAN > PDBDIR/5lf1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5lf3.pdb -s PSB6_HUMAN > PDBDIR/5lf3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5lf4.pdb -s PSB6_HUMAN > PDBDIR/5lf4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5lf6.pdb -s PSB6_HUMAN > PDBDIR/5lf6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5lf7.pdb -s PSB6_HUMAN > PDBDIR/5lf7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5ln3.pdb -s PSB6_HUMAN > PDBDIR/5ln3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5t0c.pdb -s PSB6_HUMAN > PDBDIR/5t0c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5t0g.pdb -s PSB6_HUMAN > PDBDIR/5t0g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5t0h.pdb -s PSB6_HUMAN > PDBDIR/5t0h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5t0i.pdb -s PSB6_HUMAN > PDBDIR/5t0i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153966-154176-PSB6_HUMAN.aln -p PDBDIR/5t0j.pdb -s PSB6_HUMAN > PDBDIR/5t0j_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/68067-68292-UCHL5_HUMAN.aln -p PDBDIR/3a7s.pdb -s UCHL5_HUMAN > PDBDIR/3a7s_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/68067-68292-UCHL5_HUMAN.aln -p PDBDIR/3ihr.pdb -s UCHL5_HUMAN > PDBDIR/3ihr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/68067-68292-UCHL5_HUMAN.aln -p PDBDIR/3rii.pdb -s UCHL5_HUMAN > PDBDIR/3rii_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/68067-68292-UCHL5_HUMAN.aln -p PDBDIR/3ris.pdb -s UCHL5_HUMAN > PDBDIR/3ris_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/68067-68292-UCHL5_HUMAN.aln -p PDBDIR/3tb3.pdb -s UCHL5_HUMAN > PDBDIR/3tb3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/68067-68292-UCHL5_HUMAN.aln -p PDBDIR/4uel.pdb -s UCHL5_HUMAN > PDBDIR/4uel_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/68067-68292-UCHL5_HUMAN.aln -p PDBDIR/4uem.pdb -s UCHL5_HUMAN > PDBDIR/4uem_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/68067-68292-UCHL5_HUMAN.aln -p PDBDIR/4uf5.pdb -s UCHL5_HUMAN > PDBDIR/4uf5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/68067-68292-UCHL5_HUMAN.aln -p PDBDIR/4uf6.pdb -s UCHL5_HUMAN > PDBDIR/4uf6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/68067-68292-UCHL5_HUMAN.aln -p PDBDIR/4wlp.pdb -s UCHL5_HUMAN > PDBDIR/4wlp_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/246984-247181-CSN6_HUMAN.aln -p PDBDIR/4d10.pdb -s CSN6_HUMAN > PDBDIR/4d10_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/246984-247181-CSN6_HUMAN.aln -p PDBDIR/4d18.pdb -s CSN6_HUMAN > PDBDIR/4d18_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/246984-247181-CSN6_HUMAN.aln -p PDBDIR/4qft.pdb -s CSN6_HUMAN > PDBDIR/4qft_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/246984-247181-CSN6_HUMAN.aln -p PDBDIR/4r14.pdb -s CSN6_HUMAN > PDBDIR/4r14_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/246984-247181-CSN6_HUMAN.aln -p PDBDIR/4wsn.pdb -s CSN6_HUMAN > PDBDIR/4wsn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/350593-350764-NICA_HUMAN.aln -p PDBDIR/4uis.pdb -s NICA_HUMAN > PDBDIR/4uis_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/350593-350764-NICA_HUMAN.aln -p PDBDIR/5a63.pdb -s NICA_HUMAN > PDBDIR/5a63_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/350593-350764-NICA_HUMAN.aln -p PDBDIR/5fn2.pdb -s NICA_HUMAN > PDBDIR/5fn2_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/350593-350764-NICA_HUMAN.aln -p PDBDIR/5fn3.pdb -s NICA_HUMAN > PDBDIR/5fn3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/350593-350764-NICA_HUMAN.aln -p PDBDIR/5fn4.pdb -s NICA_HUMAN > PDBDIR/5fn4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/350593-350764-NICA_HUMAN.aln -p PDBDIR/5fn5.pdb -s NICA_HUMAN > PDBDIR/5fn5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/251994-252160-RL9_HUMAN.aln -p PDBDIR/4ug0.pdb -s RL9_HUMAN > PDBDIR/4ug0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/251994-252160-RL9_HUMAN.aln -p PDBDIR/4v6x.pdb -s RL9_HUMAN > PDBDIR/4v6x_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/251994-252160-RL9_HUMAN.aln -p PDBDIR/5aj0.pdb -s RL9_HUMAN > PDBDIR/5aj0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/251994-252160-RL9_HUMAN.aln -p PDBDIR/5lks.pdb -s RL9_HUMAN > PDBDIR/5lks_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/251994-252160-RL9_HUMAN.aln -p PDBDIR/5t2c.pdb -s RL9_HUMAN > PDBDIR/5t2c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/348627-348741-SPF45_HUMAN.aln -p PDBDIR/2pe8.pdb -s SPF45_HUMAN > PDBDIR/2pe8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/348627-348741-SPF45_HUMAN.aln -p PDBDIR/2peh.pdb -s SPF45_HUMAN > PDBDIR/2peh_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/348627-348741-SPF45_HUMAN.aln -p PDBDIR/5lso.pdb -s SPF45_HUMAN > PDBDIR/5lso_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/186863-187054-NSF1C_HUMAN.aln -p PDBDIR/1ss6.pdb -s NSF1C_HUMAN > PDBDIR/1ss6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/41874-42242-ATM_HUMAN.aln -p PDBDIR/5np0.pdb -s ATM_HUMAN > PDBDIR/5np0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/41874-42242-ATM_HUMAN.aln -p PDBDIR/5np1.pdb -s ATM_HUMAN > PDBDIR/5np1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/11466-11964-NCPR_HUMAN.aln -p PDBDIR/1b1c.pdb -s NCPR_HUMAN > PDBDIR/1b1c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/11466-11964-NCPR_HUMAN.aln -p PDBDIR/3fjo.pdb -s NCPR_HUMAN > PDBDIR/3fjo_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/11466-11964-NCPR_HUMAN.aln -p PDBDIR/3qe2.pdb -s NCPR_HUMAN > PDBDIR/3qe2_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/11466-11964-NCPR_HUMAN.aln -p PDBDIR/3qfc.pdb -s NCPR_HUMAN > PDBDIR/3qfc_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/11466-11964-NCPR_HUMAN.aln -p PDBDIR/3qfr.pdb -s NCPR_HUMAN > PDBDIR/3qfr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/11466-11964-NCPR_HUMAN.aln -p PDBDIR/3qfs.pdb -s NCPR_HUMAN > PDBDIR/3qfs_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/11466-11964-NCPR_HUMAN.aln -p PDBDIR/3qft.pdb -s NCPR_HUMAN > PDBDIR/3qft_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/11466-11964-NCPR_HUMAN.aln -p PDBDIR/5emn.pdb -s NCPR_HUMAN > PDBDIR/5emn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/11466-11964-NCPR_HUMAN.aln -p PDBDIR/5fa6.pdb -s NCPR_HUMAN > PDBDIR/5fa6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/293826-293978-ERCC8_HUMAN.aln -p PDBDIR/4a11.pdb -s ERCC8_HUMAN > PDBDIR/4a11_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/347207-347375-RPAP3_HUMAN.aln -p PDBDIR/4cgv.pdb -s RPAP3_HUMAN > PDBDIR/4cgv_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/347207-347375-RPAP3_HUMAN.aln -p PDBDIR/4cgw.pdb -s RPAP3_HUMAN > PDBDIR/4cgw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/113807-114176-IQUB_HUMAN.aln -p PDBDIR/2daf.pdb -s IQUB_HUMAN > PDBDIR/2daf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/153422-153645-MOCS3_HUMAN.aln -p PDBDIR/3i2v.pdb -s MOCS3_HUMAN > PDBDIR/3i2v_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/54586-54838-UBP8_HUMAN.aln -p PDBDIR/1whb.pdb -s UBP8_HUMAN > PDBDIR/1whb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/54586-54838-UBP8_HUMAN.aln -p PDBDIR/2a9u.pdb -s UBP8_HUMAN > PDBDIR/2a9u_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/54586-54838-UBP8_HUMAN.aln -p PDBDIR/2gfo.pdb -s UBP8_HUMAN > PDBDIR/2gfo_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/54586-54838-UBP8_HUMAN.aln -p PDBDIR/2gwf.pdb -s UBP8_HUMAN > PDBDIR/2gwf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/54586-54838-UBP8_HUMAN.aln -p PDBDIR/3n3k.pdb -s UBP8_HUMAN > PDBDIR/3n3k_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268692-268822-RFA2_HUMAN.aln -p PDBDIR/1l1o.pdb -s RFA2_HUMAN > PDBDIR/1l1o_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268692-268822-RFA2_HUMAN.aln -p PDBDIR/1quq.pdb -s RFA2_HUMAN > PDBDIR/1quq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268692-268822-RFA2_HUMAN.aln -p PDBDIR/2pi2.pdb -s RFA2_HUMAN > PDBDIR/2pi2_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268692-268822-RFA2_HUMAN.aln -p PDBDIR/2pqa.pdb -s RFA2_HUMAN > PDBDIR/2pqa_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268692-268822-RFA2_HUMAN.aln -p PDBDIR/2z6k.pdb -s RFA2_HUMAN > PDBDIR/2z6k_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/268692-268822-RFA2_HUMAN.aln -p PDBDIR/3kdf.pdb -s RFA2_HUMAN > PDBDIR/3kdf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/221947-222431-GLGB_HUMAN.aln -p PDBDIR/4bzy.pdb -s GLGB_HUMAN > PDBDIR/4bzy_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/221947-222431-GLGB_HUMAN.aln -p PDBDIR/5clt.pdb -s GLGB_HUMAN > PDBDIR/5clt_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/221947-222431-GLGB_HUMAN.aln -p PDBDIR/5clw.pdb -s GLGB_HUMAN > PDBDIR/5clw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/175829-175932-CDO1_HUMAN.aln -p PDBDIR/2ic1.pdb -s CDO1_HUMAN > PDBDIR/2ic1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/343093-343202-DTD1_HUMAN.aln -p PDBDIR/2okv.pdb -s DTD1_HUMAN > PDBDIR/2okv_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/389775-390025-MET14_HUMAN.aln -p PDBDIR/5il0.pdb -s MET14_HUMAN > PDBDIR/5il0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/389775-390025-MET14_HUMAN.aln -p PDBDIR/5il1.pdb -s MET14_HUMAN > PDBDIR/5il1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/389775-390025-MET14_HUMAN.aln -p PDBDIR/5il2.pdb -s MET14_HUMAN > PDBDIR/5il2_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/389775-390025-MET14_HUMAN.aln -p PDBDIR/5k7m.pdb -s MET14_HUMAN > PDBDIR/5k7m_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/389775-390025-MET14_HUMAN.aln -p PDBDIR/5k7u.pdb -s MET14_HUMAN > PDBDIR/5k7u_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/389775-390025-MET14_HUMAN.aln -p PDBDIR/5k7w.pdb -s MET14_HUMAN > PDBDIR/5k7w_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/389775-390025-MET14_HUMAN.aln -p PDBDIR/5l6d.pdb -s MET14_HUMAN > PDBDIR/5l6d_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/389775-390025-MET14_HUMAN.aln -p PDBDIR/5l6e.pdb -s MET14_HUMAN > PDBDIR/5l6e_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/389775-390025-MET14_HUMAN.aln -p PDBDIR/5tey.pdb -s MET14_HUMAN > PDBDIR/5tey_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/209466-209613-KCY_HUMAN.aln -p PDBDIR/1tev.pdb -s KCY_HUMAN > PDBDIR/1tev_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88562-88710-APC1_HUMAN.aln -p PDBDIR/4ui9.pdb -s APC1_HUMAN > PDBDIR/4ui9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88562-88710-APC1_HUMAN.aln -p PDBDIR/5a31.pdb -s APC1_HUMAN > PDBDIR/5a31_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88562-88710-APC1_HUMAN.aln -p PDBDIR/5g04.pdb -s APC1_HUMAN > PDBDIR/5g04_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88562-88710-APC1_HUMAN.aln -p PDBDIR/5g05.pdb -s APC1_HUMAN > PDBDIR/5g05_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88562-88710-APC1_HUMAN.aln -p PDBDIR/5khr.pdb -s APC1_HUMAN > PDBDIR/5khr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88562-88710-APC1_HUMAN.aln -p PDBDIR/5khu.pdb -s APC1_HUMAN > PDBDIR/5khu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88562-88710-APC1_HUMAN.aln -p PDBDIR/5l9t.pdb -s APC1_HUMAN > PDBDIR/5l9t_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88562-88710-APC1_HUMAN.aln -p PDBDIR/5l9u.pdb -s APC1_HUMAN > PDBDIR/5l9u_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88562-88710-APC1_HUMAN.aln -p PDBDIR/5lcw.pdb -s APC1_HUMAN > PDBDIR/5lcw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/116561-116688-SRRM1_HUMAN.aln -p PDBDIR/1mp1.pdb -s SRRM1_HUMAN > PDBDIR/1mp1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/186276-186526-RL8_HUMAN.aln -p PDBDIR/4ug0.pdb -s RL8_HUMAN > PDBDIR/4ug0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/186276-186526-RL8_HUMAN.aln -p PDBDIR/4v6x.pdb -s RL8_HUMAN > PDBDIR/4v6x_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/186276-186526-RL8_HUMAN.aln -p PDBDIR/5aj0.pdb -s RL8_HUMAN > PDBDIR/5aj0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/186276-186526-RL8_HUMAN.aln -p PDBDIR/5lks.pdb -s RL8_HUMAN > PDBDIR/5lks_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/186276-186526-RL8_HUMAN.aln -p PDBDIR/5t2c.pdb -s RL8_HUMAN > PDBDIR/5t2c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/231520-231726-TRUA_HUMAN.aln -p PDBDIR/4iqm.pdb -s TRUA_HUMAN > PDBDIR/4iqm_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/231520-231726-TRUA_HUMAN.aln -p PDBDIR/4its.pdb -s TRUA_HUMAN > PDBDIR/4its_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/231520-231726-TRUA_HUMAN.aln -p PDBDIR/4j37.pdb -s TRUA_HUMAN > PDBDIR/4j37_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/231520-231726-TRUA_HUMAN.aln -p PDBDIR/4nz6.pdb -s TRUA_HUMAN > PDBDIR/4nz6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/231520-231726-TRUA_HUMAN.aln -p PDBDIR/4nz7.pdb -s TRUA_HUMAN > PDBDIR/4nz7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/295375-295580-LST8_HUMAN.aln -p PDBDIR/4jsn.pdb -s LST8_HUMAN > PDBDIR/4jsn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/295375-295580-LST8_HUMAN.aln -p PDBDIR/4jsp.pdb -s LST8_HUMAN > PDBDIR/4jsp_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/295375-295580-LST8_HUMAN.aln -p PDBDIR/4jsv.pdb -s LST8_HUMAN > PDBDIR/4jsv_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/295375-295580-LST8_HUMAN.aln -p PDBDIR/4jsx.pdb -s LST8_HUMAN > PDBDIR/4jsx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/295375-295580-LST8_HUMAN.aln -p PDBDIR/4jt5.pdb -s LST8_HUMAN > PDBDIR/4jt5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/295375-295580-LST8_HUMAN.aln -p PDBDIR/4jt6.pdb -s LST8_HUMAN > PDBDIR/4jt6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/295375-295580-LST8_HUMAN.aln -p PDBDIR/5flc.pdb -s LST8_HUMAN > PDBDIR/5flc_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/295375-295580-LST8_HUMAN.aln -p PDBDIR/5h64.pdb -s LST8_HUMAN > PDBDIR/5h64_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/288315-288466-PPIL1_HUMAN.aln -p PDBDIR/1xwn.pdb -s PPIL1_HUMAN > PDBDIR/1xwn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/288315-288466-PPIL1_HUMAN.aln -p PDBDIR/2k7n.pdb -s PPIL1_HUMAN > PDBDIR/2k7n_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/288315-288466-PPIL1_HUMAN.aln -p PDBDIR/2x7k.pdb -s PPIL1_HUMAN > PDBDIR/2x7k_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/288315-288466-PPIL1_HUMAN.aln -p PDBDIR/5mqf.pdb -s PPIL1_HUMAN > PDBDIR/5mqf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/316192-316318-TARB1_HUMAN.aln -p PDBDIR/2ha8.pdb -s TARB1_HUMAN > PDBDIR/2ha8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/161247-161374-RAD21_HUMAN.aln -p PDBDIR/4pju.pdb -s RAD21_HUMAN > PDBDIR/4pju_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/161247-161374-RAD21_HUMAN.aln -p PDBDIR/4pjw.pdb -s RAD21_HUMAN > PDBDIR/4pjw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/161247-161374-RAD21_HUMAN.aln -p PDBDIR/4pk7.pdb -s RAD21_HUMAN > PDBDIR/4pk7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/259033-259317-CSN1_HUMAN.aln -p PDBDIR/4d10.pdb -s CSN1_HUMAN > PDBDIR/4d10_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/259033-259317-CSN1_HUMAN.aln -p PDBDIR/4d18.pdb -s CSN1_HUMAN > PDBDIR/4d18_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/259033-259317-CSN1_HUMAN.aln -p PDBDIR/4wsn.pdb -s CSN1_HUMAN > PDBDIR/4wsn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/138892-139231-RPOM_HUMAN.aln -p PDBDIR/3spa.pdb -s RPOM_HUMAN > PDBDIR/3spa_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/138892-139231-RPOM_HUMAN.aln -p PDBDIR/4boc.pdb -s RPOM_HUMAN > PDBDIR/4boc_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/228769-228976-TRNT1_HUMAN.aln -p PDBDIR/1ou5.pdb -s TRNT1_HUMAN > PDBDIR/1ou5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/228769-228976-TRNT1_HUMAN.aln -p PDBDIR/4x4w.pdb -s TRNT1_HUMAN > PDBDIR/4x4w_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/192778-193217-PRP17_HUMAN.aln -p PDBDIR/5mqf.pdb -s PRP17_HUMAN > PDBDIR/5mqf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/193502-193630-ZGPAT_HUMAN.aln -p PDBDIR/4ii1.pdb -s ZGPAT_HUMAN > PDBDIR/4ii1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/123669-123871-UPP1_HUMAN.aln -p PDBDIR/3eue.pdb -s UPP1_HUMAN > PDBDIR/3eue_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/123669-123871-UPP1_HUMAN.aln -p PDBDIR/3euf.pdb -s UPP1_HUMAN > PDBDIR/3euf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/123669-123871-UPP1_HUMAN.aln -p PDBDIR/3nbq.pdb -s UPP1_HUMAN > PDBDIR/3nbq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/198219-198317-GLRX5_HUMAN.aln -p PDBDIR/2mmz.pdb -s GLRX5_HUMAN > PDBDIR/2mmz_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/198219-198317-GLRX5_HUMAN.aln -p PDBDIR/2wul.pdb -s GLRX5_HUMAN > PDBDIR/2wul_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/177168-177602-SSRP1_HUMAN.aln -p PDBDIR/4ifs.pdb -s SSRP1_HUMAN > PDBDIR/4ifs_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/390339-390450-RPB4_HUMAN.aln -p PDBDIR/2c35.pdb -s RPB4_HUMAN > PDBDIR/2c35_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/390339-390450-RPB4_HUMAN.aln -p PDBDIR/5iy6.pdb -s RPB4_HUMAN > PDBDIR/5iy6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/390339-390450-RPB4_HUMAN.aln -p PDBDIR/5iy7.pdb -s RPB4_HUMAN > PDBDIR/5iy7_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/390339-390450-RPB4_HUMAN.aln -p PDBDIR/5iy8.pdb -s RPB4_HUMAN > PDBDIR/5iy8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/390339-390450-RPB4_HUMAN.aln -p PDBDIR/5iy9.pdb -s RPB4_HUMAN > PDBDIR/5iy9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/390339-390450-RPB4_HUMAN.aln -p PDBDIR/5iya.pdb -s RPB4_HUMAN > PDBDIR/5iya_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/390339-390450-RPB4_HUMAN.aln -p PDBDIR/5iyb.pdb -s RPB4_HUMAN > PDBDIR/5iyb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/390339-390450-RPB4_HUMAN.aln -p PDBDIR/5iyc.pdb -s RPB4_HUMAN > PDBDIR/5iyc_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/390339-390450-RPB4_HUMAN.aln -p PDBDIR/5iyd.pdb -s RPB4_HUMAN > PDBDIR/5iyd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/313334-313677-PSD11_HUMAN.aln -p PDBDIR/5gjq.pdb -s PSD11_HUMAN > PDBDIR/5gjq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/313334-313677-PSD11_HUMAN.aln -p PDBDIR/5gjr.pdb -s PSD11_HUMAN > PDBDIR/5gjr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/313334-313677-PSD11_HUMAN.aln -p PDBDIR/5l4k.pdb -s PSD11_HUMAN > PDBDIR/5l4k_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/313334-313677-PSD11_HUMAN.aln -p PDBDIR/5ln3.pdb -s PSD11_HUMAN > PDBDIR/5ln3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/313334-313677-PSD11_HUMAN.aln -p PDBDIR/5t0c.pdb -s PSD11_HUMAN > PDBDIR/5t0c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/313334-313677-PSD11_HUMAN.aln -p PDBDIR/5t0g.pdb -s PSD11_HUMAN > PDBDIR/5t0g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/313334-313677-PSD11_HUMAN.aln -p PDBDIR/5t0h.pdb -s PSD11_HUMAN > PDBDIR/5t0h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/313334-313677-PSD11_HUMAN.aln -p PDBDIR/5t0i.pdb -s PSD11_HUMAN > PDBDIR/5t0i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/313334-313677-PSD11_HUMAN.aln -p PDBDIR/5t0j.pdb -s PSD11_HUMAN > PDBDIR/5t0j_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/12219-12579-HBS1L_HUMAN.aln -p PDBDIR/5lzw.pdb -s HBS1L_HUMAN > PDBDIR/5lzw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/12219-12579-HBS1L_HUMAN.aln -p PDBDIR/5lzx.pdb -s HBS1L_HUMAN > PDBDIR/5lzx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/12219-12579-HBS1L_HUMAN.aln -p PDBDIR/5lzy.pdb -s HBS1L_HUMAN > PDBDIR/5lzy_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/12219-12579-HBS1L_HUMAN.aln -p PDBDIR/5lzz.pdb -s HBS1L_HUMAN > PDBDIR/5lzz_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/266701-266898-RNH2A_HUMAN.aln -p PDBDIR/3p56.pdb -s RNH2A_HUMAN > PDBDIR/3p56_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/266701-266898-RNH2A_HUMAN.aln -p PDBDIR/3puf.pdb -s RNH2A_HUMAN > PDBDIR/3puf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/259513-259629-SF3B6_HUMAN.aln -p PDBDIR/2f9d.pdb -s SF3B6_HUMAN > PDBDIR/2f9d_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/259513-259629-SF3B6_HUMAN.aln -p PDBDIR/2f9j.pdb -s SF3B6_HUMAN > PDBDIR/2f9j_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/259513-259629-SF3B6_HUMAN.aln -p PDBDIR/3lqv.pdb -s SF3B6_HUMAN > PDBDIR/3lqv_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/333042-333148-LIN54_HUMAN.aln -p PDBDIR/5fd3.pdb -s LIN54_HUMAN > PDBDIR/5fd3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/358167-358357-TRDMT_HUMAN.aln -p PDBDIR/1g55.pdb -s TRDMT_HUMAN > PDBDIR/1g55_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/317926-318047-MAF1_HUMAN.aln -p PDBDIR/3nr5.pdb -s MAF1_HUMAN > PDBDIR/3nr5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/204722-204839-TPPC4_HUMAN.aln -p PDBDIR/2j3t.pdb -s TPPC4_HUMAN > PDBDIR/2j3t_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/204722-204839-TPPC4_HUMAN.aln -p PDBDIR/2zmv.pdb -s TPPC4_HUMAN > PDBDIR/2zmv_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/262413-262556-NAGK_HUMAN.aln -p PDBDIR/2ch5.pdb -s NAGK_HUMAN > PDBDIR/2ch5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/262413-262556-NAGK_HUMAN.aln -p PDBDIR/2ch6.pdb -s NAGK_HUMAN > PDBDIR/2ch6_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/243201-243370-UCHL3_HUMAN.aln -p PDBDIR/1uch.pdb -s UCHL3_HUMAN > PDBDIR/1uch_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/243201-243370-UCHL3_HUMAN.aln -p PDBDIR/1xd3.pdb -s UCHL3_HUMAN > PDBDIR/1xd3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/378363-378495-MCEE_HUMAN.aln -p PDBDIR/3rmu.pdb -s MCEE_HUMAN > PDBDIR/3rmu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/346146-346415-CMTR1_HUMAN.aln -p PDBDIR/4n48.pdb -s CMTR1_HUMAN > PDBDIR/4n48_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/346146-346415-CMTR1_HUMAN.aln -p PDBDIR/4n49.pdb -s CMTR1_HUMAN > PDBDIR/4n49_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/346146-346415-CMTR1_HUMAN.aln -p PDBDIR/4n4a.pdb -s CMTR1_HUMAN > PDBDIR/4n4a_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/146240-146494-PRI1_HUMAN.aln -p PDBDIR/4bpu.pdb -s PRI1_HUMAN > PDBDIR/4bpu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/146240-146494-PRI1_HUMAN.aln -p PDBDIR/4bpw.pdb -s PRI1_HUMAN > PDBDIR/4bpw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/146240-146494-PRI1_HUMAN.aln -p PDBDIR/4bpx.pdb -s PRI1_HUMAN > PDBDIR/4bpx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/146240-146494-PRI1_HUMAN.aln -p PDBDIR/4lik.pdb -s PRI1_HUMAN > PDBDIR/4lik_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/146240-146494-PRI1_HUMAN.aln -p PDBDIR/4lil.pdb -s PRI1_HUMAN > PDBDIR/4lil_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/146240-146494-PRI1_HUMAN.aln -p PDBDIR/4mhq.pdb -s PRI1_HUMAN > PDBDIR/4mhq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/146240-146494-PRI1_HUMAN.aln -p PDBDIR/4rr2.pdb -s PRI1_HUMAN > PDBDIR/4rr2_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/146240-146494-PRI1_HUMAN.aln -p PDBDIR/5exr.pdb -s PRI1_HUMAN > PDBDIR/5exr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/401205-401319-IGBP1_HUMAN.aln -p PDBDIR/4iyp.pdb -s IGBP1_HUMAN > PDBDIR/4iyp_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/289906-289998-MCU_HUMAN.aln -p PDBDIR/4xtb.pdb -s MCU_HUMAN > PDBDIR/4xtb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/289906-289998-MCU_HUMAN.aln -p PDBDIR/5kue.pdb -s MCU_HUMAN > PDBDIR/5kue_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/289906-289998-MCU_HUMAN.aln -p PDBDIR/5kug.pdb -s MCU_HUMAN > PDBDIR/5kug_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/289906-289998-MCU_HUMAN.aln -p PDBDIR/5kui.pdb -s MCU_HUMAN > PDBDIR/5kui_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/289906-289998-MCU_HUMAN.aln -p PDBDIR/5kuj.pdb -s MCU_HUMAN > PDBDIR/5kuj_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/354817-354932-MANF_HUMAN.aln -p PDBDIR/2kvd.pdb -s MANF_HUMAN > PDBDIR/2kvd_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/354817-354932-MANF_HUMAN.aln -p PDBDIR/2w51.pdb -s MANF_HUMAN > PDBDIR/2w51_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/216791-216872-AMPH_HUMAN.aln -p PDBDIR/3sog.pdb -s AMPH_HUMAN > PDBDIR/3sog_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/216791-216872-AMPH_HUMAN.aln -p PDBDIR/4atm.pdb -s AMPH_HUMAN > PDBDIR/4atm_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/107360-107627-POLK_HUMAN.aln -p PDBDIR/1t94.pdb -s POLK_HUMAN > PDBDIR/1t94_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/107360-107627-POLK_HUMAN.aln -p PDBDIR/2oh2.pdb -s POLK_HUMAN > PDBDIR/2oh2_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/107360-107627-POLK_HUMAN.aln -p PDBDIR/2w7o.pdb -s POLK_HUMAN > PDBDIR/2w7o_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/107360-107627-POLK_HUMAN.aln -p PDBDIR/2w7p.pdb -s POLK_HUMAN > PDBDIR/2w7p_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/107360-107627-POLK_HUMAN.aln -p PDBDIR/3in5.pdb -s POLK_HUMAN > PDBDIR/3in5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/107360-107627-POLK_HUMAN.aln -p PDBDIR/3pzp.pdb -s POLK_HUMAN > PDBDIR/3pzp_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/107360-107627-POLK_HUMAN.aln -p PDBDIR/4u6p.pdb -s POLK_HUMAN > PDBDIR/4u6p_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/107360-107627-POLK_HUMAN.aln -p PDBDIR/4u7c.pdb -s POLK_HUMAN > PDBDIR/4u7c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/107360-107627-POLK_HUMAN.aln -p PDBDIR/5t14.pdb -s POLK_HUMAN > PDBDIR/5t14_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/308162-308281-RL14_HUMAN.aln -p PDBDIR/4ug0.pdb -s RL14_HUMAN > PDBDIR/4ug0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/308162-308281-RL14_HUMAN.aln -p PDBDIR/4v6x.pdb -s RL14_HUMAN > PDBDIR/4v6x_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/308162-308281-RL14_HUMAN.aln -p PDBDIR/5aj0.pdb -s RL14_HUMAN > PDBDIR/5aj0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/308162-308281-RL14_HUMAN.aln -p PDBDIR/5lks.pdb -s RL14_HUMAN > PDBDIR/5lks_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/308162-308281-RL14_HUMAN.aln -p PDBDIR/5t2c.pdb -s RL14_HUMAN > PDBDIR/5t2c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/218908-218994-HPBP1_HUMAN.aln -p PDBDIR/1xqr.pdb -s HPBP1_HUMAN > PDBDIR/1xqr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/218908-218994-HPBP1_HUMAN.aln -p PDBDIR/1xqs.pdb -s HPBP1_HUMAN > PDBDIR/1xqs_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/252830-252936-APH1A_HUMAN.aln -p PDBDIR/5a63.pdb -s APH1A_HUMAN > PDBDIR/5a63_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/252830-252936-APH1A_HUMAN.aln -p PDBDIR/5fn2.pdb -s APH1A_HUMAN > PDBDIR/5fn2_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/252830-252936-APH1A_HUMAN.aln -p PDBDIR/5fn3.pdb -s APH1A_HUMAN > PDBDIR/5fn3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/252830-252936-APH1A_HUMAN.aln -p PDBDIR/5fn4.pdb -s APH1A_HUMAN > PDBDIR/5fn4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/252830-252936-APH1A_HUMAN.aln -p PDBDIR/5fn5.pdb -s APH1A_HUMAN > PDBDIR/5fn5_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/265480-265928-SYDC_HUMAN.aln -p PDBDIR/4j15.pdb -s SYDC_HUMAN > PDBDIR/4j15_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273436-273534-RM13_HUMAN.aln -p PDBDIR/3j7y.pdb -s RM13_HUMAN > PDBDIR/3j7y_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/273436-273534-RM13_HUMAN.aln -p PDBDIR/3j9m.pdb -s RM13_HUMAN > PDBDIR/3j9m_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/323396-323603-EI2BA_HUMAN.aln -p PDBDIR/3ecs.pdb -s EI2BA_HUMAN > PDBDIR/3ecs_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/326093-326237-TF2H1_HUMAN.aln -p PDBDIR/1pfj.pdb -s TF2H1_HUMAN > PDBDIR/1pfj_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/326093-326237-TF2H1_HUMAN.aln -p PDBDIR/2rnr.pdb -s TF2H1_HUMAN > PDBDIR/2rnr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/326093-326237-TF2H1_HUMAN.aln -p PDBDIR/2ruk.pdb -s TF2H1_HUMAN > PDBDIR/2ruk_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/326093-326237-TF2H1_HUMAN.aln -p PDBDIR/2rvb.pdb -s TF2H1_HUMAN > PDBDIR/2rvb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/326093-326237-TF2H1_HUMAN.aln -p PDBDIR/5gow.pdb -s TF2H1_HUMAN > PDBDIR/5gow_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/210543-210690-NUP62_HUMAN.aln -p PDBDIR/2h4d.pdb -s NUP62_HUMAN > PDBDIR/2h4d_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/210543-210690-NUP62_HUMAN.aln -p PDBDIR/5ijn.pdb -s NUP62_HUMAN > PDBDIR/5ijn_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/210543-210690-NUP62_HUMAN.aln -p PDBDIR/5ijo.pdb -s NUP62_HUMAN > PDBDIR/5ijo_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/359966-360432-TAF2_HUMAN.aln -p PDBDIR/5fur.pdb -s TAF2_HUMAN > PDBDIR/5fur_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/54166-54585-SYSC_HUMAN.aln -p PDBDIR/3vbb.pdb -s SYSC_HUMAN > PDBDIR/3vbb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/54166-54585-SYSC_HUMAN.aln -p PDBDIR/4l87.pdb -s SYSC_HUMAN > PDBDIR/4l87_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/54166-54585-SYSC_HUMAN.aln -p PDBDIR/4rqe.pdb -s SYSC_HUMAN > PDBDIR/4rqe_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/54166-54585-SYSC_HUMAN.aln -p PDBDIR/4rqf.pdb -s SYSC_HUMAN > PDBDIR/4rqf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/344363-344575-HEM3_HUMAN.aln -p PDBDIR/3ecr.pdb -s HEM3_HUMAN > PDBDIR/3ecr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/344363-344575-HEM3_HUMAN.aln -p PDBDIR/3eq1.pdb -s HEM3_HUMAN > PDBDIR/3eq1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/97319-97870-DDX1_HUMAN.aln -p PDBDIR/4xw3.pdb -s DDX1_HUMAN > PDBDIR/4xw3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/274554-274744-RU2A_HUMAN.aln -p PDBDIR/1a9n.pdb -s RU2A_HUMAN > PDBDIR/1a9n_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/274554-274744-RU2A_HUMAN.aln -p PDBDIR/5mqf.pdb -s RU2A_HUMAN > PDBDIR/5mqf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/162379-162480-RWD2A_HUMAN.aln -p PDBDIR/2daw.pdb -s RWD2A_HUMAN > PDBDIR/2daw_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/306569-306705-EIF3M_HUMAN.aln -p PDBDIR/3j8b.pdb -s EIF3M_HUMAN > PDBDIR/3j8b_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/306569-306705-EIF3M_HUMAN.aln -p PDBDIR/3j8c.pdb -s EIF3M_HUMAN > PDBDIR/3j8c_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/65795-66105-ODPB_HUMAN.aln -p PDBDIR/1ni4.pdb -s ODPB_HUMAN > PDBDIR/1ni4_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/65795-66105-ODPB_HUMAN.aln -p PDBDIR/2ozl.pdb -s ODPB_HUMAN > PDBDIR/2ozl_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/65795-66105-ODPB_HUMAN.aln -p PDBDIR/3exe.pdb -s ODPB_HUMAN > PDBDIR/3exe_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/65795-66105-ODPB_HUMAN.aln -p PDBDIR/3exf.pdb -s ODPB_HUMAN > PDBDIR/3exf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/65795-66105-ODPB_HUMAN.aln -p PDBDIR/3exg.pdb -s ODPB_HUMAN > PDBDIR/3exg_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/65795-66105-ODPB_HUMAN.aln -p PDBDIR/3exh.pdb -s ODPB_HUMAN > PDBDIR/3exh_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/65795-66105-ODPB_HUMAN.aln -p PDBDIR/3exi.pdb -s ODPB_HUMAN > PDBDIR/3exi_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/287295-287516-GGPPS_HUMAN.aln -p PDBDIR/2q80.pdb -s GGPPS_HUMAN > PDBDIR/2q80_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/319892-320123-CI114_HUMAN.aln -p PDBDIR/4rg1.pdb -s CI114_HUMAN > PDBDIR/4rg1_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/133632-134040-SYFA_HUMAN.aln -p PDBDIR/3l4g.pdb -s SYFA_HUMAN > PDBDIR/3l4g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/181184-181334-CCNK_HUMAN.aln -p PDBDIR/2i53.pdb -s CCNK_HUMAN > PDBDIR/2i53_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/181184-181334-CCNK_HUMAN.aln -p PDBDIR/4cxa.pdb -s CCNK_HUMAN > PDBDIR/4cxa_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/181184-181334-CCNK_HUMAN.aln -p PDBDIR/4nst.pdb -s CCNK_HUMAN > PDBDIR/4nst_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/181184-181334-CCNK_HUMAN.aln -p PDBDIR/4un0.pdb -s CCNK_HUMAN > PDBDIR/4un0_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/181184-181334-CCNK_HUMAN.aln -p PDBDIR/5acb.pdb -s CCNK_HUMAN > PDBDIR/5acb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/181184-181334-CCNK_HUMAN.aln -p PDBDIR/5efq.pdb -s CCNK_HUMAN > PDBDIR/5efq_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/367191-367275-NAA40_HUMAN.aln -p PDBDIR/4u9v.pdb -s NAA40_HUMAN > PDBDIR/4u9v_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/367191-367275-NAA40_HUMAN.aln -p PDBDIR/4u9w.pdb -s NAA40_HUMAN > PDBDIR/4u9w_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/61145-61305-PPIL3_HUMAN.aln -p PDBDIR/1xyh.pdb -s PPIL3_HUMAN > PDBDIR/1xyh_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/61145-61305-PPIL3_HUMAN.aln -p PDBDIR/2oju.pdb -s PPIL3_HUMAN > PDBDIR/2oju_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/61145-61305-PPIL3_HUMAN.aln -p PDBDIR/2ok3.pdb -s PPIL3_HUMAN > PDBDIR/2ok3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/302761-303093-TRAP1_HUMAN.aln -p PDBDIR/4z1f.pdb -s TRAP1_HUMAN > PDBDIR/4z1f_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/302761-303093-TRAP1_HUMAN.aln -p PDBDIR/4z1g.pdb -s TRAP1_HUMAN > PDBDIR/4z1g_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/302761-303093-TRAP1_HUMAN.aln -p PDBDIR/4z1h.pdb -s TRAP1_HUMAN > PDBDIR/4z1h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/302761-303093-TRAP1_HUMAN.aln -p PDBDIR/4z1i.pdb -s TRAP1_HUMAN > PDBDIR/4z1i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/302761-303093-TRAP1_HUMAN.aln -p PDBDIR/5f3k.pdb -s TRAP1_HUMAN > PDBDIR/5f3k_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/302761-303093-TRAP1_HUMAN.aln -p PDBDIR/5f5r.pdb -s TRAP1_HUMAN > PDBDIR/5f5r_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/302761-303093-TRAP1_HUMAN.aln -p PDBDIR/5hph.pdb -s TRAP1_HUMAN > PDBDIR/5hph_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/324422-324514-ORC3_HUMAN.aln -p PDBDIR/5uj8.pdb -s ORC3_HUMAN > PDBDIR/5uj8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/324422-324514-ORC3_HUMAN.aln -p PDBDIR/5ujm.pdb -s ORC3_HUMAN > PDBDIR/5ujm_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/274393-274553-RAB21_HUMAN.aln -p PDBDIR/1yzt.pdb -s RAB21_HUMAN > PDBDIR/1yzt_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/274393-274553-RAB21_HUMAN.aln -p PDBDIR/1yzu.pdb -s RAB21_HUMAN > PDBDIR/1yzu_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/274393-274553-RAB21_HUMAN.aln -p PDBDIR/1z08.pdb -s RAB21_HUMAN > PDBDIR/1z08_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/274393-274553-RAB21_HUMAN.aln -p PDBDIR/1z0i.pdb -s RAB21_HUMAN > PDBDIR/1z0i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/274393-274553-RAB21_HUMAN.aln -p PDBDIR/2ot3.pdb -s RAB21_HUMAN > PDBDIR/2ot3_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/256257-256387-NU160_HUMAN.aln -p PDBDIR/5a9q.pdb -s NU160_HUMAN > PDBDIR/5a9q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88210-88402-PRC1_HUMAN.aln -p PDBDIR/3nrx.pdb -s PRC1_HUMAN > PDBDIR/3nrx_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88210-88402-PRC1_HUMAN.aln -p PDBDIR/3nry.pdb -s PRC1_HUMAN > PDBDIR/3nry_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88210-88402-PRC1_HUMAN.aln -p PDBDIR/4l3i.pdb -s PRC1_HUMAN > PDBDIR/4l3i_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88210-88402-PRC1_HUMAN.aln -p PDBDIR/4l6y.pdb -s PRC1_HUMAN > PDBDIR/4l6y_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/88210-88402-PRC1_HUMAN.aln -p PDBDIR/5kmg.pdb -s PRC1_HUMAN > PDBDIR/5kmg_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/188559-188896-GEPH_HUMAN.aln -p PDBDIR/1jlj.pdb -s GEPH_HUMAN > PDBDIR/1jlj_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/195338-195950-SYMPK_HUMAN.aln -p PDBDIR/3o2q.pdb -s SYMPK_HUMAN > PDBDIR/3o2q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/195338-195950-SYMPK_HUMAN.aln -p PDBDIR/3o2s.pdb -s SYMPK_HUMAN > PDBDIR/3o2s_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/195338-195950-SYMPK_HUMAN.aln -p PDBDIR/3o2t.pdb -s SYMPK_HUMAN > PDBDIR/3o2t_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/195338-195950-SYMPK_HUMAN.aln -p PDBDIR/3odr.pdb -s SYMPK_HUMAN > PDBDIR/3odr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/195338-195950-SYMPK_HUMAN.aln -p PDBDIR/3ods.pdb -s SYMPK_HUMAN > PDBDIR/3ods_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/195338-195950-SYMPK_HUMAN.aln -p PDBDIR/4h3h.pdb -s SYMPK_HUMAN > PDBDIR/4h3h_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/195338-195950-SYMPK_HUMAN.aln -p PDBDIR/4h3k.pdb -s SYMPK_HUMAN > PDBDIR/4h3k_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/244813-245083-HAT1_HUMAN.aln -p PDBDIR/2p0w.pdb -s HAT1_HUMAN > PDBDIR/2p0w_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/369955-370074-PSF3_HUMAN.aln -p PDBDIR/2e9x.pdb -s PSF3_HUMAN > PDBDIR/2e9x_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/369955-370074-PSF3_HUMAN.aln -p PDBDIR/2eho.pdb -s PSF3_HUMAN > PDBDIR/2eho_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/369955-370074-PSF3_HUMAN.aln -p PDBDIR/2q9q.pdb -s PSF3_HUMAN > PDBDIR/2q9q_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/158001-158112-JMJD6_HUMAN.aln -p PDBDIR/3k2o.pdb -s JMJD6_HUMAN > PDBDIR/3k2o_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/158001-158112-JMJD6_HUMAN.aln -p PDBDIR/3ld8.pdb -s JMJD6_HUMAN > PDBDIR/3ld8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/158001-158112-JMJD6_HUMAN.aln -p PDBDIR/3ldb.pdb -s JMJD6_HUMAN > PDBDIR/3ldb_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/118274-118439-ITPA_HUMAN.aln -p PDBDIR/2car.pdb -s ITPA_HUMAN > PDBDIR/2car_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/118274-118439-ITPA_HUMAN.aln -p PDBDIR/2i5d.pdb -s ITPA_HUMAN > PDBDIR/2i5d_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/118274-118439-ITPA_HUMAN.aln -p PDBDIR/2j4e.pdb -s ITPA_HUMAN > PDBDIR/2j4e_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/118274-118439-ITPA_HUMAN.aln -p PDBDIR/4f95.pdb -s ITPA_HUMAN > PDBDIR/4f95_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/176114-176562-PRP19_HUMAN.aln -p PDBDIR/4lg8.pdb -s PRP19_HUMAN > PDBDIR/4lg8_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/176114-176562-PRP19_HUMAN.aln -p PDBDIR/5mqf.pdb -s PRP19_HUMAN > PDBDIR/5mqf_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/90724-91031-MCE1_HUMAN.aln -p PDBDIR/2c46.pdb -s MCE1_HUMAN > PDBDIR/2c46_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/90724-91031-MCE1_HUMAN.aln -p PDBDIR/3s24.pdb -s MCE1_HUMAN > PDBDIR/3s24_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/399932-400019-LSM3_HUMAN.aln -p PDBDIR/3jcr.pdb -s LSM3_HUMAN > PDBDIR/3jcr_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232297-232471-PR38A_HUMAN.aln -p PDBDIR/4rz9.pdb -s PR38A_HUMAN > PDBDIR/4rz9_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232297-232471-PR38A_HUMAN.aln -p PDBDIR/4rza.pdb -s PR38A_HUMAN > PDBDIR/4rza_w_hp.pdb
~/git/pdbcolor/pdb_heteropecilly.py -a blast_alignments_20171009-153805/232297-232471-PR38A_HUMAN.aln -p PDBDIR/5f5s.pdb -s PR38A_HUMAN > PDBDIR/5f5s_w_hp.pdb