From d164644e92e126653958825510391e550a1b39a1 Mon Sep 17 00:00:00 2001 From: Vladimir Kiselev Date: Fri, 29 May 2015 14:17:12 +0100 Subject: [PATCH] edit README --- README.md | 10 ++++++++-- 1 file changed, 8 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 12e71b7..440efee 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,8 @@ ## Prerequisites 1. [LSF](http://www-03.ibm.com/systems/platformcomputing/products/lsf/) or [SGE](http://www.oracle.com/us/products/tools/oracle-grid-engine-075549.html) cluster -2. [COPASI](http://www.copasi.org/), [R](http://www.r-project.org/), [perl](https://www.perl.org/) and [Bash](http://www.gnu.org/software/bash/) installed on the cluster. +2. [COPASI](http://www.copasi.org/), [perl](https://www.perl.org/) and [Bash](http://www.gnu.org/software/bash/) installed on the cluster. +3. [R](http://www.r-project.org/) itself and [gplots](http://cran.r-project.org/web/packages/gplots/index.html) and [ggplot2](http://ggplot2.org/) packages installed in it. ## Workflow: @@ -28,7 +29,12 @@ where **n** is number of parameter estimations and **c** is your cluster queuing 3. **results/ind/estd-params.txt** - this file contains all estimated parameters for parameter estimation with **ind** index. +4. **results/model-correlations.pdf** - heatmap of correlations between models in the top 10 estimated parameter sets -Authors: Vladimir Kiselev, Marija Jankovic +5. **results/param-correlations.pdf** - heatmap of correlations between parameters in the top 10 estimated parameter sets + +6. **results/param-correlations.pdf** - variance of parameters in the top 10 estimated parameter sets + +Authors: [Vladimir Kiselev](www.genat.uk), Marija Jankovic Acknowledgments: Martina Fröhlich