mkdocs.yml

site_name: ANANSE
site_description: ANalysis Algorithm for Networks Specified by Enhancers.
site_author: Quan Xu, Georgios Georgiou, Siebren Frölich, Maarten van der Sande, Jos Smits, Simon van Heeringen
copyright: Copyright &copy; 2023 <a href="https://github.com/vanheeringen-lab">vanheeringen-lab</a>.

repo_url: https://github.com/vanheeringen-lab/ANANSE/

theme: readthedocs

markdown_extensions:
  - admonition
  - pymdownx.details
  - pymdownx.superfences
  - footnotes

#extra_css:
#  - css/extra.css

extra_javascript:
    - 'https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/MathJax.js?config=TeX-MML-AM_CHTML'

nav:
  - Home: 'index.md'
  - Model Description: 'model_description.md'
  - Installation: 'installation.md'
  - Input data: 'input_data.md'
  - Command-line reference: 'command-line_reference.md'
  - API documentation: 'API_documentation.md'
  - Examples: 'examples.md'
  - FAQ: 'faq.md'
  - Acknowledgments: 'acknowledgments.md'