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Generate fasta file that includes short stack matches to database #46

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sr320 opened this issue May 17, 2024 · 4 comments

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sr320 commented May 17, 2024

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sr320 assigned kubu4

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kubu4 commented May 17, 2024

Sorry, how does this differ than the existing ShortStack output FastA?

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sr320 commented May 17, 2024

Sorry - lets get a fasta of just those miRNAs in the database that matched our deep dive samples

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kubu4 commented May 22, 2024

Apul:

https://github.com/urol-e5/deep-dive/blob/main/D-Apul/output/13.2.1.1-Apul-sRNAseq-ShortStack-FastA-extraction/mature-miRBase-matches.fasta

Peve

https://github.com/urol-e5/deep-dive/blob/main/E-Peve/output/08.2.1-Peve-sRNAseq-ShortStack-FastA-extraction/mature-miRBase-matches.fasta

Pmea

https://github.com/urol-e5/deep-dive/blob/main/F-Pmea/output/13.2.1.1-Pmea-sRNAseq-ShortStack-FastA-extraction/mature-miRBase-matches.fasta

Member Author

sr320 commented May 31, 2024

Sorry - lets get a fasta of just those miRNAs in the database

I think these are our seqs... I was wanting a fasta of those in the database...

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