From dc33beebd5498f3c2c3ee35305ca721083434b4f Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Tue, 13 Dec 2022 11:44:30 -0700
Subject: [PATCH 01/27] adding Linux_versions

---
 .github/workflows/Linux_versions.yml | 346 +++++++++++++++++++++++++++
 1 file changed, 346 insertions(+)
 create mode 100644 .github/workflows/Linux_versions.yml

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
new file mode 100644
index 000000000..d2de03bfa
--- /dev/null
+++ b/.github/workflows/Linux_versions.yml
@@ -0,0 +1,346 @@
+# UFS_UTILS test workflow.
+#
+# Check different versions of dependencies.
+#
+# Ed Hartnett 12/13/22
+name: Linux_versions 
+on:
+  push:
+    branches:
+    - develop
+    paths-ignore:
+    - README.md
+  pull_request:
+    branches:
+    - develop
+    paths-ignore:
+    - README.md
+
+defaults:
+  run:
+    shell: bash -exo pipefail {0}
+
+jobs:
+  Linux_versions:
+    runs-on: ubuntu-latest
+    env:
+      FC: mpifort
+      CC: mpicc
+      FCFLAGS: -fallow-argument-mismatch
+
+    steps:
+
+    - name: install-dependencies
+      run: |
+        sudo apt-get update
+        sudo apt-get install libpng-dev zlib1g-dev libjpeg-dev doxygen libmpich-dev
+        sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config        
+        python3 -m pip install gcovr
+
+    - name: cache-esmf
+      id: cache-esmf
+      uses: actions/cache@v2
+      with:
+        path: ~/esmf
+        key: Linux_versions-esmf-8.2.0-${{ runner.os }}3
+
+    - name: build-esmf
+      if: steps.cache-esmf.outputs.cache-hit != 'true'
+      run: |
+        pushd ~
+        export ESMF_DIR=~/esmf-ESMF_8_2_0
+        wget https://github.com/esmf-org/esmf/archive/ESMF_8_2_0.tar.gz &> /dev/null
+        tar zxf ESMF_8_2_0.tar.gz
+        cd esmf-ESMF_8_2_0
+        export ESMF_COMM=mpich3
+        export ESMF_INSTALL_BINDIR=bin
+        export ESMF_INSTALL_LIBDIR=lib
+        export ESMF_INSTALL_MODDIR=mod
+        export ESMF_COMPILER=gfortran
+        export ESMF_INSTALL_PREFIX=~/esmf
+        export ESMF_NETCDF=split
+        export ESMF_NETCDF_INCLUDE=/usr/include
+        export ESMF_NETCDF_LIBPATH=/usr/x86_64-linux-gnu
+        make -j2
+        make install
+
+    - name: cache-jasper
+      id: cache-jasper
+      uses: actions/cache@v2
+      with:
+        path: ~/jasper
+        key: Linux_versions-jasper-${{ runner.os }}-2.0.33-1
+
+    - name: checkout-jasper
+      if: steps.cache-jasper.outputs.cache-hit != 'true'    
+      uses: actions/checkout@v2
+      with:
+        repository: jasper-software/jasper
+        path: jasper
+        ref: version-2.0.33
+
+    - name: build-jasper
+      if: steps.cache-jasper.outputs.cache-hit != 'true'
+      run: |
+        cd jasper
+        mkdir build-jasper && cd build-jasper
+        cmake .. -DCMAKE_INSTALL_PREFIX=~/jasper
+        make -j2
+        make install
+
+    - name: cache-bacio
+      id: cache-bacio
+      uses: actions/cache@v2
+      with:
+        path: ~/bacio
+        key: Linux_versions-bacio-${{ runner.os }}-v2.4.1
+
+    - name: checkout-bacio
+      if: steps.cache-bacio.outputs.cache-hit != 'true'
+      uses: actions/checkout@v2
+      with:
+        repository: NOAA-EMC/NCEPLIBS-bacio
+        path: bacio
+        ref: v2.4.1
+    
+    - name: build-bacio
+      if: steps.cache-bacio.outputs.cache-hit != 'true'
+      run: |
+        cd bacio
+        mkdir build && cd build
+        cmake .. -DCMAKE_INSTALL_PREFIX=~/bacio
+        make -j2
+        make install
+
+    - name: cache-g2
+      id: cache-g2
+      uses: actions/cache@v2
+      with:
+        path: ~/g2
+        key: Linux_versions-g2-${{ runner.os }}-3.4.3
+
+    - name: checkout-g2
+      if: steps.cache-g2.outputs.cache-hit != 'true'
+      uses: actions/checkout@v2
+      with:
+        repository: NOAA-EMC/NCEPLIBS-g2
+        path: g2
+        ref: v3.4.3
+
+    - name: build-g2
+      if: steps.cache-g2.outputs.cache-hit != 'true'
+      run: |
+        cd g2
+        mkdir build
+        cd build
+        cmake -DCMAKE_INSTALL_PREFIX=~/g2 -DCMAKE_PREFIX_PATH="~/bacio;~/jasper" ..
+        make -j2
+        make install
+
+    - name: cache-sp
+      id: cache-sp
+      uses: actions/cache@v2
+      with:
+        path: ~/sp
+        key: Linux_versions-sp-${{ runner.os }}-2.3.3-1
+
+    - name: checkout-sp
+      if: steps.cache-sp.outputs.cache-hit != 'true'
+      uses: actions/checkout@v2
+      with:
+        repository: NOAA-EMC/NCEPLIBS-sp
+        path: sp
+        ref: v2.3.3
+
+    - name: build-sp
+      if: steps.cache-sp.outputs.cache-hit != 'true'
+      run: |
+        cd sp
+        mkdir build
+        cd build
+        cmake .. -DCMAKE_INSTALL_PREFIX=~/sp
+        make -j2
+        make install
+
+    - name: cache-ip
+      id: cache-ip
+      uses: actions/cache@v2
+      with:
+        path: ~/ip
+        key: Linux_versions-ip-${{ runner.os }}-3.3.3
+
+    - name: checkout-ip
+      if: steps.cache-ip.outputs.cache-hit != 'true'
+      uses: actions/checkout@v2
+      with:
+        repository: NOAA-EMC/NCEPLIBS-ip
+        path: ip
+        ref: v3.3.3
+
+    - name: build-ip
+      if: steps.cache-ip.outputs.cache-hit != 'true'
+      run: |
+        cd ip
+        mkdir build
+        cd build
+        cmake -DCMAKE_INSTALL_PREFIX=~/ip -DCMAKE_PREFIX_PATH=~~/sp ..
+        make -j2
+        make install
+
+    # - name: checkout-w3emc
+    #   uses: actions/checkout@v2
+    #   with:
+    #     repository: NOAA-EMC/NCEPLIBS-w3emc
+    #     path: w3emc
+    #     ref: develop
+
+    # - name: build-w3emc
+    #   run: |
+    #     cd w3emc
+    #     mkdir build
+    #     cd build
+    #     cmake -DCMAKE_PREFIX_PATH=~/bacio -DCMAKE_INSTALL_PREFIX=~/w3emc ..
+    #     make -j2
+    #     make install
+        
+    # - name: checkout-g2c
+    #   uses: actions/checkout@v2
+    #   with:
+    #     repository: NOAA-EMC/NCEPLIBS-g2c
+    #     path: g2c
+    #     ref: develop
+
+    # - name: build-g2c
+    #   run: |
+    #     cd g2c
+    #     mkdir build
+    #     cd build
+    #     cmake .. -DCMAKE_INSTALL_PREFIX=~/g2c -DJasper_ROOT=~/jasper
+    #     make -j2
+    #     make install
+
+    - name: cache-sfcio
+      id: cache-sfcio
+      uses: actions/cache@v2
+      with:
+        path: ~/sfcio
+        key: Linux_versions-sfcio-${{ runner.os }}-1.4.0-1
+
+    - name: checkout-sfcio
+      if: steps.cache-sfcio.outputs.cache-hit != 'true'
+      uses: actions/checkout@v2
+      with:
+        repository: NOAA-EMC/NCEPLIBS-sfcio
+        path: sfcio
+        ref: v1.4.0
+
+    - name: build-sfcio
+      if: steps.cache-sfcio.outputs.cache-hit != 'true'
+      run: |
+        cd sfcio
+        mkdir build
+        cd build
+        cmake .. -DCMAKE_INSTALL_PREFIX=~/sfcio
+        make -j2
+        make install
+
+    - name: cache-w3nco
+      id: cache-w3nco
+      uses: actions/cache@v2
+      with:
+        path: ~/w3nco
+        key: Linux_versions-w3nco-${{ runner.os }}-2.4.0
+
+    - name: checkout-w3nco
+      if: steps.cache-w3nco.outputs.cache-hit != 'true'
+      uses: actions/checkout@v2
+      with:
+        repository: NOAA-EMC/NCEPLIBS-w3nco
+        path: w3nco
+        ref: v2.4.0
+
+    - name: build-w3nco
+      if: steps.cache-w3nco.outputs.cache-hit != 'true'
+      run: |
+        cd w3nco
+        mkdir build
+        cd build
+        cmake .. -DCMAKE_INSTALL_PREFIX=~/w3nco
+        make -j2
+        make install
+
+    - name: cache-nemsio
+      id: cache-nemsio
+      uses: actions/cache@v2
+      with:
+        path: ~/nemsio
+        key: Linux_versions-nemsio-${{ runner.os }}-2.5.0-1
+
+    - name: checkout-nemsio
+      if: steps.cache-nemsio.outputs.cache-hit != 'true'
+      uses: actions/checkout@v2
+      with:
+        repository: NOAA-EMC/NCEPLIBS-nemsio
+        path: nemsio
+        ref: v2.5.0
+
+    - name: build-nemsio
+      if: steps.cache-nemsio.outputs.cache-hit != 'true'
+      run: |
+        cd nemsio
+        mkdir build
+        cd build
+        cmake -DCMAKE_INSTALL_PREFIX=~/nemsio -DCMAKE_PREFIX_PATH="~/bacio;~/w3nco" ..
+        make -j2
+        make install
+
+    - name: cache-sigio
+      id: cache-sigio
+      uses: actions/cache@v2
+      with:
+        path: ~/sigio
+        key: Linux_versions-sigio-${{ runner.os }}-2.3.0
+
+    - name: checkout-sigio
+      if: steps.cache-sigio.outputs.cache-hit != 'true'
+      uses: actions/checkout@v2
+      with:
+        repository: NOAA-EMC/NCEPLIBS-sigio
+        path: sigio
+        ref: v2.3.0
+
+    - name: build-sigio
+      if: steps.cache-sigio.outputs.cache-hit != 'true'
+      run: |
+        cd sigio
+        mkdir build
+        cd build
+        cmake .. -DCMAKE_INSTALL_PREFIX=~/sigio
+        make -j2
+        make install
+
+    - name: checkout
+      uses: actions/checkout@v2
+      with:
+        path: ufs_utils
+        submodules: true
+
+    - name:  build
+      run: |
+        set -x
+        cd ufs_utils
+        mkdir build
+        export ESMFMKFILE=~/esmf/lib/esmf.mk
+        cd build
+    #     cmake .. -DTEST_FILE_DIR=/home/runner/data -DJasper_ROOT=~/jasper -DCMAKE_PREFIX_PATH="~/g2c;~/bacio;~/g2;~/w3nco;~/sfcio;~/sigio;~/nemsio;~/sp;~/ip" ..
+    #     make -j2 VERBOSE=1
+
+    # - name: test
+    #   run: |
+    #     cd ufs_utils/build
+    #     ctest --verbose --rerun-failed --output-on-failure
+
+        
+
+
+

From a077916ae92c4c3dd053e9b3a4d4863a1bb4355c Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Tue, 13 Dec 2022 12:03:39 -0700
Subject: [PATCH 02/27] adding Linux_versions

---
 .github/workflows/debug-docs-test_coverage.yml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/debug-docs-test_coverage.yml b/.github/workflows/debug-docs-test_coverage.yml
index be1371f69..4dad130ca 100644
--- a/.github/workflows/debug-docs-test_coverage.yml
+++ b/.github/workflows/debug-docs-test_coverage.yml
@@ -111,9 +111,7 @@ jobs:
         export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:~/jasper/lib;~/jasper/lib64"
         cmake .. -DCMAKE_PREFIX_PATH='~/jasper;~/nceplibs' -DCMAKE_BUILD_TYPE=Debug -DENABLE_DOCS=On -DCMAKE_Fortran_FLAGS="-g -fprofile-arcs -ftest-coverage -O0"
         make -j2
-
     - name: test
       run: |
         cd ufs_utils/build
-#        export LSAN_OPTIONS=suppressions=LSanSuppress.supp
         ctest --rerun-failed --output-on-failure

From bbebbb8859eac982562e97db12a1cdd16d8a2320 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Tue, 13 Dec 2022 12:10:33 -0700
Subject: [PATCH 03/27] adding Linux_versions

---
 .github/workflows/netcdf-versions.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/netcdf-versions.yml b/.github/workflows/netcdf-versions.yml
index 424bff3ca..c1fd644b1 100644
--- a/.github/workflows/netcdf-versions.yml
+++ b/.github/workflows/netcdf-versions.yml
@@ -160,7 +160,7 @@ jobs:
         export CXX=mpicxx
         export FC=mpifort
         export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:~/jasper/lib;~/jasper/lib64"
-        cmake .. -DCMAKE_PREFIX_PATH='~/jasper;~/nceplibs;~/netcdf' -DCMAKE_BUILD_TYPE=Debug 
+        cmake .. -DCMAKE_PREFIX_PATH='~/jasper;~/nceplibs;~/netcdf' -DCMAKE_BUILD_TYPE=Debug
         make -j2
 
     - name: test

From da1ed9b9ffdd40c9eeefd0fbacb0fb7d553abc0d Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Tue, 13 Dec 2022 12:15:56 -0700
Subject: [PATCH 04/27] more

---
 .github/workflows/netcdf-versions.yml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/netcdf-versions.yml b/.github/workflows/netcdf-versions.yml
index c1fd644b1..0cd9cd5b0 100644
--- a/.github/workflows/netcdf-versions.yml
+++ b/.github/workflows/netcdf-versions.yml
@@ -162,9 +162,7 @@ jobs:
         export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:~/jasper/lib;~/jasper/lib64"
         cmake .. -DCMAKE_PREFIX_PATH='~/jasper;~/nceplibs;~/netcdf' -DCMAKE_BUILD_TYPE=Debug
         make -j2
-
     - name: test
       run: |
         cd ufs_utils/build
-#        export LSAN_OPTIONS=suppressions=LSanSuppress.supp
         ctest --rerun-failed --output-on-failure

From ae839c630f1674f63bda6842350658b3114b4ab2 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Tue, 13 Dec 2022 12:22:36 -0700
Subject: [PATCH 05/27] more

---
 .github/workflows/Linux_versions.yml | 31 +++++++++++++++++++---------
 1 file changed, 21 insertions(+), 10 deletions(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index d2de03bfa..bd54f3fdc 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -27,15 +27,24 @@ jobs:
       FC: mpifort
       CC: mpicc
       FCFLAGS: -fallow-argument-mismatch
-
+    strategy:
+      matrix:
+        ver: [OLD, MED, NEW]
+        
     steps:
 
     - name: install-dependencies
       run: |
         sudo apt-get update
-        sudo apt-get install libpng-dev zlib1g-dev libjpeg-dev doxygen libmpich-dev
-        sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config        
-        python3 -m pip install gcovr
+        sudo apt-get install libpng-dev zlib1g-dev libjpeg-dev libmpich-dev
+        sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config
+        if [[ ${{ matrix.ver }} == "OLD" ]]; then
+          export bacio_VERSION=2.4.1
+        elif [[ ${{ matrix.ver }} == "MED" ]]; then        
+          export bacio_VERSION=2.4.1
+        elif [[ ${{ matrix.ver }} == "NEW" ]]; then
+          export bacio_VERSION=2.4.1
+        fi
 
     - name: cache-esmf
       id: cache-esmf
@@ -107,6 +116,8 @@ jobs:
       if: steps.cache-bacio.outputs.cache-hit != 'true'
       run: |
         cd bacio
+        echo "$bacio_VERSION"
+        echo "{{ env.$bacio_VERSION }}"
         mkdir build && cd build
         cmake .. -DCMAKE_INSTALL_PREFIX=~/bacio
         make -j2
@@ -332,13 +343,13 @@ jobs:
         mkdir build
         export ESMFMKFILE=~/esmf/lib/esmf.mk
         cd build
-    #     cmake .. -DTEST_FILE_DIR=/home/runner/data -DJasper_ROOT=~/jasper -DCMAKE_PREFIX_PATH="~/g2c;~/bacio;~/g2;~/w3nco;~/sfcio;~/sigio;~/nemsio;~/sp;~/ip" ..
-    #     make -j2 VERBOSE=1
+        cmake .. -DTEST_FILE_DIR=/home/runner/data -DJasper_ROOT=~/jasper -DCMAKE_PREFIX_PATH="~/g2c;~/bacio;~/g2;~/w3nco;~/sfcio;~/sigio;~/nemsio;~/sp;~/ip" ..
+        make -j2 VERBOSE=1
 
-    # - name: test
-    #   run: |
-    #     cd ufs_utils/build
-    #     ctest --verbose --rerun-failed --output-on-failure
+    - name: test
+      run: |
+        cd ufs_utils/build
+        ctest --verbose --rerun-failed --output-on-failure
 
         
 

From 176d1250d13aefe9be7648ac08ed923717f00788 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Tue, 13 Dec 2022 12:24:27 -0700
Subject: [PATCH 06/27] more

---
 .github/workflows/Linux_versions.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index bd54f3fdc..015e115ba 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -102,7 +102,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/bacio
-        key: Linux_versions-bacio-${{ runner.os }}-v2.4.1
+        key: Linux_versions-bacio-${{ runner.os }}-${{ matrix.ver }}
 
     - name: checkout-bacio
       if: steps.cache-bacio.outputs.cache-hit != 'true'

From 2735107165540eaa052b85ad65a2bee6acd01d7c Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Tue, 13 Dec 2022 12:32:33 -0700
Subject: [PATCH 07/27] more

---
 .github/workflows/Linux_versions.yml | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index 015e115ba..fdfb53c66 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -102,7 +102,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/bacio
-        key: Linux_versions-bacio-${{ runner.os }}-${{ matrix.ver }}
+        key: Linux_versions-bacio-${{ runner.os }}-${{ matrix.ver }}-1
 
     - name: checkout-bacio
       if: steps.cache-bacio.outputs.cache-hit != 'true'
@@ -116,8 +116,7 @@ jobs:
       if: steps.cache-bacio.outputs.cache-hit != 'true'
       run: |
         cd bacio
-        echo "$bacio_VERSION"
-        echo "{{ env.$bacio_VERSION }}"
+        echo "{{ env.bacio_VERSION }}"
         mkdir build && cd build
         cmake .. -DCMAKE_INSTALL_PREFIX=~/bacio
         make -j2

From 77318c1ed6ac4d035ad059a0192ebfd18b7ac85f Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Tue, 13 Dec 2022 12:42:31 -0700
Subject: [PATCH 08/27] more

---
 .github/workflows/Linux_versions.yml | 17 +++++++++--------
 1 file changed, 9 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index fdfb53c66..33f4af1b6 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -27,6 +27,7 @@ jobs:
       FC: mpifort
       CC: mpicc
       FCFLAGS: -fallow-argument-mismatch
+      bacio_VERSION: [[ ${{ matrix.ver }} == "OLD" ]] && "2.4.1"
     strategy:
       matrix:
         ver: [OLD, MED, NEW]
@@ -38,13 +39,13 @@ jobs:
         sudo apt-get update
         sudo apt-get install libpng-dev zlib1g-dev libjpeg-dev libmpich-dev
         sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config
-        if [[ ${{ matrix.ver }} == "OLD" ]]; then
-          export bacio_VERSION=2.4.1
-        elif [[ ${{ matrix.ver }} == "MED" ]]; then        
-          export bacio_VERSION=2.4.1
-        elif [[ ${{ matrix.ver }} == "NEW" ]]; then
-          export bacio_VERSION=2.4.1
-        fi
+        # if [[ ${{ matrix.ver }} == "OLD" ]]; then
+        #   export bacio_VERSION=2.4.1
+        # elif [[ ${{ matrix.ver }} == "MED" ]]; then        
+        #   export bacio_VERSION=2.4.1
+        # elif [[ ${{ matrix.ver }} == "NEW" ]]; then
+        #   export bacio_VERSION=2.4.1
+        # fi
 
     - name: cache-esmf
       id: cache-esmf
@@ -102,7 +103,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/bacio
-        key: Linux_versions-bacio-${{ runner.os }}-${{ matrix.ver }}-1
+        key: Linux_versions-bacio-${{ runner.os }}-${{ matrix.ver }}-2
 
     - name: checkout-bacio
       if: steps.cache-bacio.outputs.cache-hit != 'true'

From d66e043cb6c688ea4cc85e2b7d6e72607efe197a Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Tue, 13 Dec 2022 12:43:47 -0700
Subject: [PATCH 09/27] more

---
 .github/workflows/Linux_versions.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index 33f4af1b6..e3e640a81 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -27,7 +27,7 @@ jobs:
       FC: mpifort
       CC: mpicc
       FCFLAGS: -fallow-argument-mismatch
-      bacio_VERSION: [[ ${{ matrix.ver }} == "OLD" ]] && "2.4.1"
+      bacio_VERSION: "2.4.1"
     strategy:
       matrix:
         ver: [OLD, MED, NEW]

From 43f42f9be58a763e890a9584d0a63119f11eb506 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Tue, 13 Dec 2022 12:49:56 -0700
Subject: [PATCH 10/27] more

---
 .github/workflows/Linux_versions.yml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index e3e640a81..9547b8d98 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -30,12 +30,15 @@ jobs:
       bacio_VERSION: "2.4.1"
     strategy:
       matrix:
+        fail-fast: true
         ver: [OLD, MED, NEW]
         
     steps:
 
     - name: install-dependencies
       run: |
+        echo "${{ env.bacio_VERSION }}"
+        echo "$bacio_VERSION"
         sudo apt-get update
         sudo apt-get install libpng-dev zlib1g-dev libjpeg-dev libmpich-dev
         sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config
@@ -117,7 +120,6 @@ jobs:
       if: steps.cache-bacio.outputs.cache-hit != 'true'
       run: |
         cd bacio
-        echo "{{ env.bacio_VERSION }}"
         mkdir build && cd build
         cmake .. -DCMAKE_INSTALL_PREFIX=~/bacio
         make -j2

From 034aa37b8bd95c8e06c993cd01cdd306f1714203 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Tue, 13 Dec 2022 12:52:29 -0700
Subject: [PATCH 11/27] more

---
 .github/workflows/Linux_versions.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index 9547b8d98..ae7e6a502 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -29,8 +29,8 @@ jobs:
       FCFLAGS: -fallow-argument-mismatch
       bacio_VERSION: "2.4.1"
     strategy:
+      fail-fast: true
       matrix:
-        fail-fast: true
         ver: [OLD, MED, NEW]
         
     steps:

From 17ca147046edd7a4b74ec96bfc615b1635e33e16 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 06:34:00 -0700
Subject: [PATCH 12/27] added data cache to Linux_versions workflow

---
 .github/workflows/Linux_versions.yml | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index ae7e6a502..15565b54a 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -338,6 +338,13 @@ jobs:
         path: ufs_utils
         submodules: true
 
+    - name: cache-data
+      id: cache-data
+      uses: actions/cache@v2
+      with:
+        path: ~/data
+        key: data-1
+
     - name:  build
       run: |
         set -x
@@ -353,6 +360,18 @@ jobs:
         cd ufs_utils/build
         ctest --verbose --rerun-failed --output-on-failure
 
+    - name: cache-data
+      if: steps.cache-data.outputs.cache-hit != 'true'
+      run: |
+        mkdir ~/data
+        cp ufs_utils/build/tests/chgres_cube/data/* ~/data
+        cp ufs_utils/build/tests/sfc_climo_gen/data/* ~/data
+        cp ufs_utils/build/tests/cpld_gridgen/data/* ~/data
+        cp ufs_utils/tests/filter_topo/data/* ~/data
+        cp ufs_utils/tests/emcsfc_snow2mdl/data/* ~/data
+        cp ufs_utils/tests/chgres_cube/data/* ~/data
+        ls -l ~/data
+        
         
 
 

From 1df8ef1ffbe235037c431dbbf1dc730c0b7111bc Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 06:44:53 -0700
Subject: [PATCH 13/27] working on OLD, NEW

---
 .github/workflows/Linux_versions.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index 15565b54a..3486dacf6 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -27,7 +27,7 @@ jobs:
       FC: mpifort
       CC: mpicc
       FCFLAGS: -fallow-argument-mismatch
-      bacio_VERSION: "2.4.1"
+      bacio_VERSION: if [[ $${{ matrix.ver }} == 'NEW' ]] ; then echo "2.5.0"; else echo "2.4.1" ; fi
     strategy:
       fail-fast: true
       matrix:

From 3aa38390e8337254dc2240836ef21381574c8d84 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 06:46:46 -0700
Subject: [PATCH 14/27] working on OLD, NEW

---
 .github/workflows/Linux_versions.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index 3486dacf6..6e415652b 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -27,7 +27,7 @@ jobs:
       FC: mpifort
       CC: mpicc
       FCFLAGS: -fallow-argument-mismatch
-      bacio_VERSION: if [[ $${{ matrix.ver }} == 'NEW' ]] ; then echo "2.5.0"; else echo "2.4.1" ; fi
+      bacio_VERSION: eval(if [[ $${{ matrix.ver }} == 'NEW' ]] ; then echo "2.5.0"; else echo "2.4.1" ; fi)
     strategy:
       fail-fast: true
       matrix:

From c14af6b8bc3aa7acfdd0e9ec4c3989e21d2145ae Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 06:55:08 -0700
Subject: [PATCH 15/27] working on OLD, NEW

---
 .github/workflows/Linux_versions.yml | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index 6e415652b..1a22d3711 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -27,7 +27,6 @@ jobs:
       FC: mpifort
       CC: mpicc
       FCFLAGS: -fallow-argument-mismatch
-      bacio_VERSION: eval(if [[ $${{ matrix.ver }} == 'NEW' ]] ; then echo "2.5.0"; else echo "2.4.1" ; fi)
     strategy:
       fail-fast: true
       matrix:
@@ -37,8 +36,6 @@ jobs:
 
     - name: install-dependencies
       run: |
-        echo "${{ env.bacio_VERSION }}"
-        echo "$bacio_VERSION"
         sudo apt-get update
         sudo apt-get install libpng-dev zlib1g-dev libjpeg-dev libmpich-dev
         sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config
@@ -348,6 +345,8 @@ jobs:
     - name:  build
       run: |
         set -x
+        echo "${{ env.bacio_VERSION }}"
+        echo "$bacio_VERSION"
         cd ufs_utils
         mkdir build
         export ESMFMKFILE=~/esmf/lib/esmf.mk

From 5dd60ecbd0cccc0efb2c491b645a87002f35d6ec Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 06:55:27 -0700
Subject: [PATCH 16/27] working on OLD, NEW

---
 .github/workflows/Linux_versions.yml | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index 1a22d3711..59840487b 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -39,13 +39,13 @@ jobs:
         sudo apt-get update
         sudo apt-get install libpng-dev zlib1g-dev libjpeg-dev libmpich-dev
         sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config
-        # if [[ ${{ matrix.ver }} == "OLD" ]]; then
-        #   export bacio_VERSION=2.4.1
-        # elif [[ ${{ matrix.ver }} == "MED" ]]; then        
-        #   export bacio_VERSION=2.4.1
-        # elif [[ ${{ matrix.ver }} == "NEW" ]]; then
-        #   export bacio_VERSION=2.4.1
-        # fi
+        if [[ ${{ matrix.ver }} == "OLD" ]]; then
+          export bacio_VERSION=2.4.1
+        elif [[ ${{ matrix.ver }} == "MED" ]]; then        
+          export bacio_VERSION=2.4.1
+        elif [[ ${{ matrix.ver }} == "NEW" ]]; then
+          export bacio_VERSION=2.4.1
+        fi
 
     - name: cache-esmf
       id: cache-esmf

From 80cddd74e295b31ee582bbd74a90f3c6c70ff8b2 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 07:13:07 -0700
Subject: [PATCH 17/27] just using versions

---
 .github/workflows/Linux_versions.yml | 43 ++++++++++++++--------------
 1 file changed, 21 insertions(+), 22 deletions(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index 59840487b..1682947e6 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -30,7 +30,13 @@ jobs:
     strategy:
       fail-fast: true
       matrix:
-        ver: [OLD, MED, NEW]
+        bacio_version: [2.4.1]
+        g2_version: [3.4.3]
+        sp_version: [2.3.3]
+        ip_version: [3.3.3]
+        w3nco_version: [2.4.0]
+        nemsio_version: [2.5.0]
+        sfcio_version: [1.4.0]
         
     steps:
 
@@ -39,13 +45,6 @@ jobs:
         sudo apt-get update
         sudo apt-get install libpng-dev zlib1g-dev libjpeg-dev libmpich-dev
         sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config
-        if [[ ${{ matrix.ver }} == "OLD" ]]; then
-          export bacio_VERSION=2.4.1
-        elif [[ ${{ matrix.ver }} == "MED" ]]; then        
-          export bacio_VERSION=2.4.1
-        elif [[ ${{ matrix.ver }} == "NEW" ]]; then
-          export bacio_VERSION=2.4.1
-        fi
 
     - name: cache-esmf
       id: cache-esmf
@@ -103,7 +102,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/bacio
-        key: Linux_versions-bacio-${{ runner.os }}-${{ matrix.ver }}-2
+        key: Linux_versions-bacio-${{ runner.os }}-${{ matrix.bacio_version }}
 
     - name: checkout-bacio
       if: steps.cache-bacio.outputs.cache-hit != 'true'
@@ -111,7 +110,7 @@ jobs:
       with:
         repository: NOAA-EMC/NCEPLIBS-bacio
         path: bacio
-        ref: v2.4.1
+        ref: v${{ matrix.bacio_version }}
     
     - name: build-bacio
       if: steps.cache-bacio.outputs.cache-hit != 'true'
@@ -127,7 +126,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/g2
-        key: Linux_versions-g2-${{ runner.os }}-3.4.3
+        key: Linux_versions-g2-${{ runner.os }}-${{ matrix.g2_version }}
 
     - name: checkout-g2
       if: steps.cache-g2.outputs.cache-hit != 'true'
@@ -135,7 +134,7 @@ jobs:
       with:
         repository: NOAA-EMC/NCEPLIBS-g2
         path: g2
-        ref: v3.4.3
+        ref: v${{ matrix.g2_version }}
 
     - name: build-g2
       if: steps.cache-g2.outputs.cache-hit != 'true'
@@ -152,7 +151,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/sp
-        key: Linux_versions-sp-${{ runner.os }}-2.3.3-1
+        key: Linux_versions-sp-${{ runner.os }}-${{ matrix.sp_version }}
 
     - name: checkout-sp
       if: steps.cache-sp.outputs.cache-hit != 'true'
@@ -160,7 +159,7 @@ jobs:
       with:
         repository: NOAA-EMC/NCEPLIBS-sp
         path: sp
-        ref: v2.3.3
+        ref: v${{ matrix.sp_version }}
 
     - name: build-sp
       if: steps.cache-sp.outputs.cache-hit != 'true'
@@ -177,7 +176,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/ip
-        key: Linux_versions-ip-${{ runner.os }}-3.3.3
+        key: Linux_versions-ip-${{ runner.os }}-${{ matrix.ip_version }}
 
     - name: checkout-ip
       if: steps.cache-ip.outputs.cache-hit != 'true'
@@ -185,7 +184,7 @@ jobs:
       with:
         repository: NOAA-EMC/NCEPLIBS-ip
         path: ip
-        ref: v3.3.3
+        ref: v${{ matrix.ip_version }}
 
     - name: build-ip
       if: steps.cache-ip.outputs.cache-hit != 'true'
@@ -234,7 +233,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/sfcio
-        key: Linux_versions-sfcio-${{ runner.os }}-1.4.0-1
+        key: Linux_versions-sfcio-${{ runner.os }}-${{ matrix.sfcio_version }}
 
     - name: checkout-sfcio
       if: steps.cache-sfcio.outputs.cache-hit != 'true'
@@ -242,7 +241,7 @@ jobs:
       with:
         repository: NOAA-EMC/NCEPLIBS-sfcio
         path: sfcio
-        ref: v1.4.0
+        ref: v${{ matrix.sfcio_version }}
 
     - name: build-sfcio
       if: steps.cache-sfcio.outputs.cache-hit != 'true'
@@ -259,7 +258,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/w3nco
-        key: Linux_versions-w3nco-${{ runner.os }}-2.4.0
+        key: Linux_versions-w3nco-${{ runner.os }}-${{ matrix.w3nco_version }}
 
     - name: checkout-w3nco
       if: steps.cache-w3nco.outputs.cache-hit != 'true'
@@ -267,7 +266,7 @@ jobs:
       with:
         repository: NOAA-EMC/NCEPLIBS-w3nco
         path: w3nco
-        ref: v2.4.0
+        ref: v${{ matrix.w3nco_version }}
 
     - name: build-w3nco
       if: steps.cache-w3nco.outputs.cache-hit != 'true'
@@ -284,7 +283,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/nemsio
-        key: Linux_versions-nemsio-${{ runner.os }}-2.5.0-1
+        key: Linux_versions-nemsio-${{ runner.os }}-${{ matrix.nemsio_version }}
 
     - name: checkout-nemsio
       if: steps.cache-nemsio.outputs.cache-hit != 'true'
@@ -292,7 +291,7 @@ jobs:
       with:
         repository: NOAA-EMC/NCEPLIBS-nemsio
         path: nemsio
-        ref: v2.5.0
+        ref: v${{ matrix.nemsio_version }}
 
     - name: build-nemsio
       if: steps.cache-nemsio.outputs.cache-hit != 'true'

From 9c3965f0eab6c3b23d0dab144a2514199f0ecf61 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 07:15:15 -0700
Subject: [PATCH 18/27] upgraded g2 to 3.4.5 in develop workflow

---
 .github/workflows/developer.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/developer.yml b/.github/workflows/developer.yml
index 2b7ad929e..53cc0d228 100644
--- a/.github/workflows/developer.yml
+++ b/.github/workflows/developer.yml
@@ -126,7 +126,7 @@ jobs:
       with:
         repository: NOAA-EMC/NCEPLIBS-g2
         path: g2
-        ref: v3.4.3
+        ref: v3.4.5
 
     - name: build-g2
       if: steps.cache-g2.outputs.cache-hit != 'true'

From 6cd0b6738c9741d10cc0ee251b1f9d938448d531 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 07:31:10 -0700
Subject: [PATCH 19/27] upgraded some versions in develop workflow

---
 .github/workflows/developer.yml       | 8 ++++----
 .github/workflows/netcdf-versions.yml | 2 +-
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/developer.yml b/.github/workflows/developer.yml
index 53cc0d228..2d6203101 100644
--- a/.github/workflows/developer.yml
+++ b/.github/workflows/developer.yml
@@ -118,7 +118,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/g2
-        key: developer-g2-${{ runner.os }}-3.4.3
+        key: developer-g2-${{ runner.os }}-3.4.5
 
     - name: checkout-g2
       if: steps.cache-g2.outputs.cache-hit != 'true'
@@ -250,15 +250,15 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/w3nco
-        key: developer-w3nco-${{ runner.os }}-2.4.0
-
+        key: developer-w3nco-${{ runner.os }}-2.4.1
+n
     - name: checkout-w3nco
       if: steps.cache-w3nco.outputs.cache-hit != 'true'
       uses: actions/checkout@v2
       with:
         repository: NOAA-EMC/NCEPLIBS-w3nco
         path: w3nco
-        ref: v2.4.0
+        ref: v2.4.1
 
     - name: build-w3nco
       if: steps.cache-w3nco.outputs.cache-hit != 'true'
diff --git a/.github/workflows/netcdf-versions.yml b/.github/workflows/netcdf-versions.yml
index 413f9327a..0909cb8ee 100644
--- a/.github/workflows/netcdf-versions.yml
+++ b/.github/workflows/netcdf-versions.yml
@@ -89,7 +89,7 @@ jobs:
         key: esmf-8.2.0-${{ runner.os }}-netcdf-${{ matrix.netcdf_version }}3
 
     - name: build-esmf
-      #if: steps.cache-esmf.outputs.cache-hit != 'true'
+      if: steps.cache-esmf.outputs.cache-hit != 'true'
       run: |
         pushd ~
         export ESMF_DIR=~/esmf-ESMF_8_2_0

From 34bc28b5974ce23457b0c60c180ef1dfeabbb3ee Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 07:32:04 -0700
Subject: [PATCH 20/27] upgraded some versions in develop workflow

---
 .github/workflows/developer.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/developer.yml b/.github/workflows/developer.yml
index 2d6203101..eeec6bda2 100644
--- a/.github/workflows/developer.yml
+++ b/.github/workflows/developer.yml
@@ -251,7 +251,7 @@ jobs:
       with:
         path: ~/w3nco
         key: developer-w3nco-${{ runner.os }}-2.4.1
-n
+
     - name: checkout-w3nco
       if: steps.cache-w3nco.outputs.cache-hit != 'true'
       uses: actions/checkout@v2

From 1db86d731010d507be46a5c3b81244664ea75a52 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 07:50:36 -0700
Subject: [PATCH 21/27] more changes

---
 ...ug-docs-test_coverage.yml => Linux_nceplibs.yml} |  8 +++-----
 .github/workflows/Linux_versions.yml                | 13 ++++++-------
 2 files changed, 9 insertions(+), 12 deletions(-)
 rename .github/workflows/{debug-docs-test_coverage.yml => Linux_nceplibs.yml} (94%)

diff --git a/.github/workflows/debug-docs-test_coverage.yml b/.github/workflows/Linux_nceplibs.yml
similarity index 94%
rename from .github/workflows/debug-docs-test_coverage.yml
rename to .github/workflows/Linux_nceplibs.yml
index a5dc89e40..64d64df5c 100644
--- a/.github/workflows/debug-docs-test_coverage.yml
+++ b/.github/workflows/Linux_nceplibs.yml
@@ -1,4 +1,4 @@
-name: debug-docs-test_coverage
+name: Linux_nceplibs
 on:
   push:
     branches:
@@ -16,7 +16,7 @@ defaults:
     shell: bash -exo pipefail {0}
 
 jobs:
-  debug-build-and-test:
+  Linux_nceplibs:
     runs-on: ubuntu-latest
 
     steps:
@@ -25,11 +25,9 @@ jobs:
       run: |
           sudo apt-get update
           sudo apt-get install libmpich-dev
-          sudo apt-get install doxygen
           sudo apt-get install libpng-dev
           sudo apt-get install libjpeg-dev
           sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config
-          python3 -m pip install gcovr
 
     - name: cache-esmf
       id: cache-esmf
@@ -116,7 +114,7 @@ jobs:
         export CXX=mpicxx
         export FC=mpifort
         export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:~/jasper/lib;~/jasper/lib64"
-        cmake -DTEST_FILE_DIR=/home/runner/data -DCMAKE_PREFIX_PATH='~/jasper;~/nceplibs' -DCMAKE_BUILD_TYPE=Debug -DENABLE_DOCS=On  ..
+        cmake -DTEST_FILE_DIR=/home/runner/data -DCMAKE_PREFIX_PATH='~/jasper;~/nceplibs' ..
         make -j2
     - name: test
       run: |
diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index 1682947e6..1d01a7a44 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -33,10 +33,11 @@ jobs:
         bacio_version: [2.4.1]
         g2_version: [3.4.3]
         sp_version: [2.3.3]
-        ip_version: [3.3.3]
+        ip_version: [3.3.3, 4.0.0]
         w3nco_version: [2.4.0]
         nemsio_version: [2.5.0]
         sfcio_version: [1.4.0]
+        sigio_version: [2.3.0]
         
     steps:
 
@@ -308,7 +309,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/sigio
-        key: Linux_versions-sigio-${{ runner.os }}-2.3.0
+        key: Linux_versions-sigio-${{ runner.os }}-${{ matrix.sigio_version }}
 
     - name: checkout-sigio
       if: steps.cache-sigio.outputs.cache-hit != 'true'
@@ -316,7 +317,7 @@ jobs:
       with:
         repository: NOAA-EMC/NCEPLIBS-sigio
         path: sigio
-        ref: v2.3.0
+        ref: v${{ matrix.sigio_version }}
 
     - name: build-sigio
       if: steps.cache-sigio.outputs.cache-hit != 'true'
@@ -344,13 +345,11 @@ jobs:
     - name:  build
       run: |
         set -x
-        echo "${{ env.bacio_VERSION }}"
-        echo "$bacio_VERSION"
         cd ufs_utils
         mkdir build
-        export ESMFMKFILE=~/esmf/lib/esmf.mk
         cd build
-        cmake .. -DTEST_FILE_DIR=/home/runner/data -DJasper_ROOT=~/jasper -DCMAKE_PREFIX_PATH="~/g2c;~/bacio;~/g2;~/w3nco;~/sfcio;~/sigio;~/nemsio;~/sp;~/ip" ..
+        export ESMFMKFILE=~/esmf/lib/esmf.mk
+        cmake -DTEST_FILE_DIR=/home/runner/data -DCMAKE_PREFIX_PATH="~/jasper;~/g2c;~/bacio;~/g2;~/w3nco;~/sfcio;~/sigio;~/nemsio;~/sp;~/ip" ..
         make -j2 VERBOSE=1
 
     - name: test

From 17071d541eb75f7e47d9443dc7f328b8618d5df9 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 07:56:53 -0700
Subject: [PATCH 22/27] more changes

---
 .github/workflows/Linux_nceplibs.yml         | 9 ++++++---
 .github/workflows/Linux_versions.yml         | 6 +++++-
 .github/workflows/linux-mac-nceplibs-mpi.yml | 1 +
 3 files changed, 12 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/Linux_nceplibs.yml b/.github/workflows/Linux_nceplibs.yml
index 64d64df5c..e1e33af51 100644
--- a/.github/workflows/Linux_nceplibs.yml
+++ b/.github/workflows/Linux_nceplibs.yml
@@ -1,3 +1,8 @@
+# UFS_UTILS test workflow.
+#
+# Check UFS_UTILS build based on the NCEPLIBS project (deprecated, but still works).
+#
+# Ed Hartnett 12/13/22
 name: Linux_nceplibs
 on:
   push:
@@ -24,9 +29,7 @@ jobs:
     - name: install-dependencies
       run: |
           sudo apt-get update
-          sudo apt-get install libmpich-dev
-          sudo apt-get install libpng-dev
-          sudo apt-get install libjpeg-dev
+          sudo apt-get install libmpich-dev libpng-dev libjpeg-dev
           sudo apt-get install libnetcdf-dev libnetcdff-dev netcdf-bin pkg-config
 
     - name: cache-esmf
diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index 1d01a7a44..f1ec1e84f 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -1,6 +1,6 @@
 # UFS_UTILS test workflow.
 #
-# Check different versions of dependencies.
+# Check different versions of the NCEPLIBS libraries that are used by UFS_UTILS.
 #
 # Ed Hartnett 12/13/22
 name: Linux_versions 
@@ -190,6 +190,10 @@ jobs:
     - name: build-ip
       if: steps.cache-ip.outputs.cache-hit != 'true'
       run: |
+        pwd
+        ls -l ~
+        ls -l ~/sp
+        ls -l ~/sp/lib
         cd ip
         mkdir build
         cd build
diff --git a/.github/workflows/linux-mac-nceplibs-mpi.yml b/.github/workflows/linux-mac-nceplibs-mpi.yml
index bb01b29ee..43d611949 100644
--- a/.github/workflows/linux-mac-nceplibs-mpi.yml
+++ b/.github/workflows/linux-mac-nceplibs-mpi.yml
@@ -23,6 +23,7 @@ jobs:
       FC: gfortran-9
       CXX: g++-9
     strategy:
+      fail-fast: true      
       matrix:
         os: [macos-11, ubuntu-latest]
         compiler: [gcc-9]

From c5aea3795bad627fb461fc7ef1ec5f32dfe734ec Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 08:17:53 -0700
Subject: [PATCH 23/27] more changes

---
 .github/workflows/Linux_versions.yml |  6 +-----
 .github/workflows/developer.yml      | 12 ++++++------
 2 files changed, 7 insertions(+), 11 deletions(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index f1ec1e84f..630762e0f 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -190,14 +190,10 @@ jobs:
     - name: build-ip
       if: steps.cache-ip.outputs.cache-hit != 'true'
       run: |
-        pwd
-        ls -l ~
-        ls -l ~/sp
-        ls -l ~/sp/lib
         cd ip
         mkdir build
         cd build
-        cmake -DCMAKE_INSTALL_PREFIX=~/ip -DCMAKE_PREFIX_PATH=~~/sp ..
+        cmake -DCMAKE_INSTALL_PREFIX=~/ip -DCMAKE_PREFIX_PATH=~/sp ..
         make -j2
         make install
 
diff --git a/.github/workflows/developer.yml b/.github/workflows/developer.yml
index eeec6bda2..d1a1aca47 100644
--- a/.github/workflows/developer.yml
+++ b/.github/workflows/developer.yml
@@ -225,7 +225,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/sfcio
-        key: developer-sfcio-${{ runner.os }}-1.4.0-1
+        key: developer-sfcio-${{ runner.os }}-1.4.1
 
     - name: checkout-sfcio
       if: steps.cache-sfcio.outputs.cache-hit != 'true'
@@ -233,7 +233,7 @@ jobs:
       with:
         repository: NOAA-EMC/NCEPLIBS-sfcio
         path: sfcio
-        ref: v1.4.0
+        ref: v1.4.1
 
     - name: build-sfcio
       if: steps.cache-sfcio.outputs.cache-hit != 'true'
@@ -275,7 +275,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/nemsio
-        key: developer-nemsio-${{ runner.os }}-2.5.0-1
+        key: developer-nemsio-${{ runner.os }}-2.5.4
 
     - name: checkout-nemsio
       if: steps.cache-nemsio.outputs.cache-hit != 'true'
@@ -283,7 +283,7 @@ jobs:
       with:
         repository: NOAA-EMC/NCEPLIBS-nemsio
         path: nemsio
-        ref: v2.5.0
+        ref: v2.5.4
 
     - name: build-nemsio
       if: steps.cache-nemsio.outputs.cache-hit != 'true'
@@ -300,7 +300,7 @@ jobs:
       uses: actions/cache@v2
       with:
         path: ~/sigio
-        key: developer-sigio-${{ runner.os }}-2.3.0
+        key: developer-sigio-${{ runner.os }}-2.3.2
 
     - name: checkout-sigio
       if: steps.cache-sigio.outputs.cache-hit != 'true'
@@ -308,7 +308,7 @@ jobs:
       with:
         repository: NOAA-EMC/NCEPLIBS-sigio
         path: sigio
-        ref: v2.3.0
+        ref: v2.3.2
 
     - name: build-sigio
       if: steps.cache-sigio.outputs.cache-hit != 'true'

From b552b143f859b8a6ca0f18166997f49a3978d686 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 08:42:09 -0700
Subject: [PATCH 24/27] more changes

---
 .github/workflows/developer.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/developer.yml b/.github/workflows/developer.yml
index d1a1aca47..bb7d99932 100644
--- a/.github/workflows/developer.yml
+++ b/.github/workflows/developer.yml
@@ -1,7 +1,7 @@
 # UFS_UTILS test workflow.
 #
 # This workflow tests all developer options including
-# documentation check, and test code coverage.
+# documentation check, and test code coverage. 
 #
 # Ed Hartnett 12/11/22
 name: developer 

From 2a082a34658dae16c2e1317b0d810256a279e815 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 09:09:03 -0700
Subject: [PATCH 25/27] more changes

---
 .github/workflows/Linux_versions.yml |  2 +-
 .github/workflows/developer.yml      | 30 ++++++++++++++--------------
 2 files changed, 16 insertions(+), 16 deletions(-)

diff --git a/.github/workflows/Linux_versions.yml b/.github/workflows/Linux_versions.yml
index 630762e0f..8d44f5a0d 100644
--- a/.github/workflows/Linux_versions.yml
+++ b/.github/workflows/Linux_versions.yml
@@ -33,7 +33,7 @@ jobs:
         bacio_version: [2.4.1]
         g2_version: [3.4.3]
         sp_version: [2.3.3]
-        ip_version: [3.3.3, 4.0.0]
+        ip_version: [3.3.3]
         w3nco_version: [2.4.0]
         nemsio_version: [2.5.0]
         sfcio_version: [1.4.0]
diff --git a/.github/workflows/developer.yml b/.github/workflows/developer.yml
index bb7d99932..6c70a4854 100644
--- a/.github/workflows/developer.yml
+++ b/.github/workflows/developer.yml
@@ -188,21 +188,21 @@ jobs:
         make -j2
         make install
 
-    # - name: checkout-w3emc
-    #   uses: actions/checkout@v2
-    #   with:
-    #     repository: NOAA-EMC/NCEPLIBS-w3emc
-    #     path: w3emc
-    #     ref: develop
+    - name: checkout-w3emc
+      uses: actions/checkout@v2
+      with:
+        repository: NOAA-EMC/NCEPLIBS-w3emc
+        path: w3emc
+        ref: v2.9.0
 
-    # - name: build-w3emc
-    #   run: |
-    #     cd w3emc
-    #     mkdir build
-    #     cd build
-    #     cmake -DCMAKE_PREFIX_PATH=~/bacio -DCMAKE_INSTALL_PREFIX=~/w3emc ..
-    #     make -j2
-    #     make install
+    - name: build-w3emc
+      run: |
+        cd w3emc
+        mkdir build
+        cd build
+        cmake -DCMAKE_PREFIX_PATH=~/bacio -DCMAKE_INSTALL_PREFIX=~/w3emc ..
+        make -j2
+        make install
         
     # - name: checkout-g2c
     #   uses: actions/checkout@v2
@@ -291,7 +291,7 @@ jobs:
         cd nemsio
         mkdir build
         cd build
-        cmake -DCMAKE_INSTALL_PREFIX=~/nemsio -DCMAKE_PREFIX_PATH="~/bacio;~/w3nco" ..
+        cmake -DCMAKE_INSTALL_PREFIX=~/nemsio -DCMAKE_PREFIX_PATH="~/bacio;~/w3emc" ..
         make -j2
         make install
 

From d53274f9f0e588954cfa5359b003591824352841 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 09:28:33 -0700
Subject: [PATCH 26/27] more changes

---
 .github/workflows/developer.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/developer.yml b/.github/workflows/developer.yml
index 6c70a4854..905527610 100644
--- a/.github/workflows/developer.yml
+++ b/.github/workflows/developer.yml
@@ -340,7 +340,7 @@ jobs:
         doxygen --version
         export ESMFMKFILE=~/esmf/lib/esmf.mk
         cd build
-        cmake -DTEST_FILE_DIR=/home/runner/data -DENABLE_DOCS=On -DCMAKE_PREFIX_PATH="~/jasper;~/g2c;~/bacio;~/g2;~/w3nco;~/sfcio;~/sigio;~/nemsio;~/sp;~/ip" -DCMAKE_Fortran_FLAGS="-g -fprofile-arcs -ftest-coverage -O0" -DCMAKE_C_FLAGS="-g -fprofile-arcs -ftest-coverage -O0"  -DCMAKE_BUILD_TYPE=Debug ..
+        cmake -DTEST_FILE_DIR=/home/runner/data -DENABLE_DOCS=On -DCMAKE_PREFIX_PATH="~/jasper;~/g2c;~/bacio;~/g2;~/w3emc;~/sfcio;~/sigio;~/nemsio;~/sp;~/ip" -DCMAKE_Fortran_FLAGS="-g -fprofile-arcs -ftest-coverage -O0" -DCMAKE_C_FLAGS="-g -fprofile-arcs -ftest-coverage -O0"  -DCMAKE_BUILD_TYPE=Debug ..
         make -j2 VERBOSE=1
 
     - name: test

From ff07b374a5431d9128470dedbe40cd743beeba50 Mon Sep 17 00:00:00 2001
From: Edward Hartnett <edward.hartnett@noaa.gov>
Date: Wed, 14 Dec 2022 09:33:26 -0700
Subject: [PATCH 27/27] more changes

---
 .github/workflows/developer.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/developer.yml b/.github/workflows/developer.yml
index 905527610..d17f9ef4d 100644
--- a/.github/workflows/developer.yml
+++ b/.github/workflows/developer.yml
@@ -340,7 +340,7 @@ jobs:
         doxygen --version
         export ESMFMKFILE=~/esmf/lib/esmf.mk
         cd build
-        cmake -DTEST_FILE_DIR=/home/runner/data -DENABLE_DOCS=On -DCMAKE_PREFIX_PATH="~/jasper;~/g2c;~/bacio;~/g2;~/w3emc;~/sfcio;~/sigio;~/nemsio;~/sp;~/ip" -DCMAKE_Fortran_FLAGS="-g -fprofile-arcs -ftest-coverage -O0" -DCMAKE_C_FLAGS="-g -fprofile-arcs -ftest-coverage -O0"  -DCMAKE_BUILD_TYPE=Debug ..
+        cmake -DTEST_FILE_DIR=/home/runner/data -DENABLE_DOCS=On -DCMAKE_PREFIX_PATH="~/jasper;~/g2c;~/bacio;~/g2;~/w3emc;~/w3nco;~/sfcio;~/sigio;~/nemsio;~/sp;~/ip" -DCMAKE_Fortran_FLAGS="-g -fprofile-arcs -ftest-coverage -O0" -DCMAKE_C_FLAGS="-g -fprofile-arcs -ftest-coverage -O0"  -DCMAKE_BUILD_TYPE=Debug ..
         make -j2 VERBOSE=1
 
     - name: test