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salo_cv.tex
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\documentclass[10pt]{article}
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\date{}
\begin{document}
\begin{center}
\namestyle{TAYLOR SALO}
\bigskip
\iconstyle{\href{https://github.com/tsalo}{\faGithubSquare}}
\enspace
\iconstyle{\href{https://orcid.org/0000-0001-9813-3167}{\aiicon{orcid-square}}}
\enspace
\iconstyle{\href{https://scholar.google.com/citations?user=IPacJoAAAAAJ}{\aiicon{googlescholar-square}}}
\enspace
\iconstyle{\href{https://osf.io/iwpvm/}{\aiicon{osf-square}}}
\end{center}
\begin{minipage}[t]{.5\linewidth}
\flushleft
\headstyle{\href{mailto:[email protected]}{\nolinkurl{[email protected]}}}
\end{minipage}
\hfill
\begin{minipage}[t]{.5\linewidth}
\flushright
\headstyle{3700 Hamilton Walk, Richards Research Labs}
\end{minipage}
\begin{minipage}[t]{.3\linewidth}
\flushleft
\headstyle{\href{https://tsalo.github.io}{tsalo.github.io}}
\end{minipage}
\hfill
\begin{minipage}[t]{.7\linewidth}
\flushright
\headstyle{Philadelphia, PA 19104}
\end{minipage}
% Now make URL hyperlinks blue
\hypersetup{
colorlinks,
urlcolor={blue!80!black}
}
\bigskip
\begin{center}\sectionstyle{PROFILE}\end{center}
Methodologically-oriented cognitive neuroscientist focused in neuroinformatics.
Strong technical skills in neuroimaging data processing, analysis, and meta-analysis.
Passionate about transparency, reproducibility, and research software development.
\bigskip
\begin{center}\sectionstyle{EDUCATION}\end{center}
\begin{minipage}[t]{.7\linewidth}
\flushleft
\noindent
Ph.D.
\href{https://fiu.edu}{\textbf{Florida International University}},
\href{https://case.fiu.edu/psychology/phd-in-cognitive-neuroscience/}{Cognitive Neuroscience}
\end{minipage}
\hfill
\begin{minipage}[t]{.3\linewidth}
\flushright
\noindent
\textsc{\textbf{2018 -- 2022}}
\end{minipage}
\begin{itemize}[noitemsep, nolistsep]
\item Dissertation: Developing and Validating Open Source Tools for Advanced Neuroimaging Research
\item Advisor: \href{https://nbclab.github.io/team/angela-laird}{Dr. Angela Laird}
\end{itemize}
\bigskip
\begin{minipage}[t]{.7\linewidth}
\flushleft
\noindent
M.S.
\href{https://fiu.edu}{\textbf{Florida International University}},
\href{https://psychology.fiu.edu}{Psychology}
\end{minipage}
\hfill
\begin{minipage}[t]{.3\linewidth}
\flushright
\noindent
\textsc{\textbf{2015 -- 2018}}
\end{minipage}
\begin{itemize}[noitemsep, nolistsep]
\item Thesis: Meta-analytic search term performance and its effect on neuroimaging meta-analytic power
\item Advisor: \href{https://nbclab.github.io/team/angela-laird}{Dr. Angela Laird}
\end{itemize}
\bigskip
\begin{minipage}[t]{.7\linewidth}
\flushleft
\noindent
B.A.
\href{https://cornell.edu}{\textbf{Cornell University}},
\href{https://www.psych.cornell.edu}{Psychology}
\end{minipage}
\hfill
\begin{minipage}[t]{.3\linewidth}
\flushright
\noindent
\textsc{\textbf{2009 -- 2013}}
\end{minipage}
\begin{itemize}[noitemsep, nolistsep]
\item
Concentration in behavioral and evolutionary neuroscience
\item
Advisor:
\href{http://www.psych.cornell.edu/people/faculty/devoogd-profile/}
{Dr. Timothy DeVoogd}
\end{itemize}
\bigskip
\begin{center}\sectionstyle{EXPERIENCE}\end{center}
\begin{minipage}[t]{.8\linewidth}
\flushleft
\noindent
\textbf{Senior Software Developer},
\href{https://www.pennlinc.io}
{\textbf{Lifespan Informatics \& Neuroimaging Center}}
\end{minipage}
\hfill
\begin{minipage}[t]{.2\linewidth}
\flushright
\noindent
\textsc{\textbf{2024 -- present}}
\end{minipage}
\href{https://www.pennlinc.io/team/Ted-Satterthwaite}{Dr. Ted Satterthwaite},
\href{https://www.upenn.edu}{University of Pennsylvania}
\bigskip
\begin{minipage}[t]{.8\linewidth}
\flushleft
\noindent
\textbf{Postdoctoral Researcher},
\href{https://www.pennlinc.io}
{\textbf{Lifespan Informatics \& Neuroimaging Center}}
\end{minipage}
\hfill
\begin{minipage}[t]{.2\linewidth}
\flushright
\noindent
\textsc{\textbf{2022 -- 2024}}
\end{minipage}
\href{https://www.pennlinc.io/team/Ted-Satterthwaite}{Dr. Ted Satterthwaite},
\href{https://www.upenn.edu}{University of Pennsylvania}
\bigskip
\begin{minipage}[t]{.8\linewidth}
\flushleft
\noindent
\textbf{Graduate Assistant},
\href{https://nbclab.github.io}
{\textbf{Neuroinformatics and Brain Connectivity Laboratory}}
\end{minipage}
\hfill
\begin{minipage}[t]{.2\linewidth}
\flushright
\noindent
\textsc{\textbf{2015 -- 2022}}
\end{minipage}
\href{https://nbclab.github.io/team/laird-angela}{Dr. Angela Laird},
\href{http://www.fiu.edu}{Florida International University}
\begin{itemize}[noitemsep, nolistsep]
\item Co-designed and executed a dense acquisition MRI pilot study.
\item Processed and analyzed neuroimaging data for multiple projects.
\item Implemented behavioral tasks in PsychoPy for multiple projects.
\item Developed, maintained, and/or contributed to several open source software projects.
\item Served as a Teaching Assistant for the ABCD-ReproNim Course (https://www.abcd-repronim.org).
\end{itemize}
\bigskip
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
\textbf{Junior Specialist},
\href{http://carterlab.ucdavis.edu/front/index.php}
{\textbf{Translational Cognitive and Affective Neuroscience Laboratory}}
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2013 -- 2015}}
\end{minipage}
\href{http://carterlab.ucdavis.edu/people/carter.php}{Dr. Cameron Carter},
\href{https://www.ucdavis.edu}{University of California, Davis}
\begin{itemize}[noitemsep, nolistsep]
\item
Acquired neuroimaging and behavioral data from healthy controls and
patients with psychosis for projects studying the effects of psychosis
on cognitive control, emotion regulation, and brain structure.
\item
Contributed to and maintained a custom codebase for the analysis of
neuroimaging and behavioral data.
\item
Processed and analyzed neuroimaging and behavioral data for several
lab projects.
\item
Administered behavioral tests and cognitive tasks, including the WASI
and WRAT, to both control and clinical populations.
\item
Trained incoming personnel to administer behavioral and cognitive
tasks.
\end{itemize}
\newpage
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
\textbf{Lab Co-Manager/Research Assistant},
\textbf{Laboratory for Lifespan Affective Neuroscience}
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2011 -- 2013}}
\end{minipage}
Dr. Barbara Ganzel,
\href{http://www.cornell.edu}{Cornell University}
\begin{itemize}[noitemsep, nolistsep]
\item
Contributed to projects investigating functional and structural
changes associated with subclinical trauma.
\item
Trained undergraduate students to preprocess and perform data
diagnostics on fMRI data.
\end{itemize}
\bigskip
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
\textbf{Undergraduate Research Assistant},
\href{http://people.psych.cornell.edu/~devoogdlab/}{\textbf{Bird Song Behavior Laboratory}}
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2012 -- 2013}}
\end{minipage}
\href{http://www.psych.cornell.edu/people/faculty/devoogd-profile/}{Dr. Timothy DeVoogd},
\href{http://www.cornell.edu}{Cornell University}
\begin{itemize}[noitemsep, nolistsep]
\item
Prepared solutions for, and assisted in, intracranial perfusion,
dissection, and staining of bird brains.
\item
Examined avian song-related neural regions microscopically.
\end{itemize}
\bigskip
\begin{center}\sectionstyle{SOFTWARE AND PROJECT DEVELOPMENT}\end{center}
\begin{samepage}
\begin{minipage}[t]{.5\linewidth}
\flushleft
\noindent
\textbf{XCP-D}
\end{minipage}
\hfill
\begin{minipage}[t]{.5\linewidth}
\flushright
\noindent
\textbf{\shorturl{xcp-d.readthedocs.io}}
\end{minipage}
\nopagebreak
\emph{Lead Developer}
\nopagebreak
\begin{adjustwidth}{2em}{0em}
XCP-D is a BIDS app for post-processing fMRI data in preparation for
resting-state connectivity analyses.
\end{adjustwidth}
\end{samepage}
\bigskip
\begin{samepage}
\begin{minipage}[t]{.5\linewidth}
\flushleft
\noindent
\textbf{ASLPrep}
\end{minipage}
\hfill
\begin{minipage}[t]{.5\linewidth}
\flushright
\noindent
\textbf{\shorturl{aslprep.readthedocs.io}}
\end{minipage}
\nopagebreak
\emph{Lead Developer}
\nopagebreak
\begin{adjustwidth}{2em}{0em}
ASLPrep is a BIDS app for processing arterial spin labeling (ASL) data
and calculating cerebral blood flow (CBF).
\end{adjustwidth}
\end{samepage}
\bigskip
\begin{samepage}
\begin{minipage}[t]{.5\linewidth}
\flushleft
\noindent
\textbf{The Brain Imaging Data Standard}
\end{minipage}
\hfill
\begin{minipage}[t]{.5\linewidth}
\flushright
\noindent
\textbf{\shorturl{bids-specification.readthedocs.io}}
\end{minipage}
\nopagebreak
\emph{Maintainer Team Member}
\nopagebreak
\begin{adjustwidth}{2em}{0em}
The Brain Imaging Data Standard (BIDS) is a specification for organizing and annotating neuroimaging data.
As a member of the maintainers team, I have been responsible for ensuring specification consistency
and helping contributors (especially large-scale BIDS extension proposals) add new elements to the specification.
In addition to my regular maintainer work, I have also spearheaded the creation of the BIDS schema,
which translates portions of the text-based specification into machine-readable YAML files.
As of now, this schema directly renders the majority of tables within the specification,
and we are in the process of using it in tools built around BIDS, including the BIDS validator, PyBIDS, and bids-matlab.
\end{adjustwidth}
\end{samepage}
\bigskip
\begin{samepage}
\begin{minipage}[t]{.5\linewidth}
\flushleft
\noindent
\textbf{Tedana}
\end{minipage}
\hfill
\begin{minipage}[t]{.5\linewidth}
\flushright
\noindent
\textbf{\shorturl{tedana.readthedocs.io}}
\end{minipage}
\nopagebreak
\emph{Maintainer Team Member}
\nopagebreak
\begin{adjustwidth}{2em}{0em}
Tedana (TE-Dependent ANAlysis) is a Python library for denoising multi-echo fMRI data.
This library succeeds the meica.py tool, with several new features and a new emphasis on best programming practices.
I have been a member of the Tedana maintainers team since 2018.
In addition to developing Tedana directly, the maintainers team has also created several associated tools,
including mapca, ddmra, godec, aroma, and RICA.
\end{adjustwidth}
\end{samepage}
\bigskip
\begin{samepage}
\begin{minipage}[t]{1.0\linewidth}
\flushleft
\noindent
\textbf{Other open source software}
\end{minipage}
\hfill
\nopagebreak
\emph{Contributor}
\nopagebreak
\begin{adjustwidth}{2em}{0em}
I am a regular contributor to several other open source projects, including fMRIPrep, PyBIDS, HeuDiConv, and Neurosynth.
\end{adjustwidth}
\end{samepage}
\bigskip
\begin{center}\sectionstyle{HONORS AND AWARDS}\end{center}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
Brain Initiative Principal Investigators Meeting Trainee Travel Award
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2019}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
Organization for Human Brain Mapping Hackathon Travel Award
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2017}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
Organization for Human Brain Mapping Merit Abstract Travel Award
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2017}}
\end{minipage}
\bigskip
\newpage
\begin{center}\sectionstyle{HACKATHONS AND TRAINING}\end{center}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
NiMARE/Neurosynth 2.0 Coding Sprint
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2022}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
BIDS Schema Coding Sprint
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2022}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
OHBM Hackathon
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2021}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
BrainHack Donostia
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2020}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
OHBM Hackathon
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2020}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
NIH Code Convergence
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2019}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
NIH Tedana Hackathon
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2019}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
OHBM Hackathon
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2019}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
Coastal Coding
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2019}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
FIU Brainconn Hackathon
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2018}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
BrainHack Montreal
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2018}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
Code Rodeo
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2018}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
OHBM Hackathon
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2017}}
\end{minipage}
\begin{minipage}[t]{.85\linewidth}
\flushleft
\noindent
Neurohackweek
\end{minipage}
\hfill
\begin{minipage}[t]{.15\linewidth}
\flushright
\noindent
\textsc{\textbf{2016}}
\end{minipage}
\bigskip
\begin{center}\sectionstyle{PUBLICATIONS}\end{center}
\begin{enumerate}
\item Zhao C, Jarecka D, Covitz S, Chen Y, Eickhoff SB, Fair DA, Franco AR, Halchenko YO, Hendrickson TJ, Hoffstaedter F, Houghton A, Kiar G, Macdonald A, Mehta K, Milham MP, \textbf{Salo T}, Hanke M, Ghosh SS, Cieslak M, \& Satterthwaite TD.
(2024).
A reproducible and generalizable software workflow for analysis of large-scale neuroimaging data collections using BIDS Apps.
\emph{Imaging Neuroscience}.
\item Peraza JA, \textbf{Salo T}, Riedel MC, Bottenhorn KL, Poline J, Dockès J, Kent JD, Bartley JE, Flannery JS, Hill-Bowen LD, Lobo RP, Poudel R, Ray KL, Robinson JL, Laird RW, Sutherland MT, Vega Adl, \& Laird AR.
(2024).
Methods for decoding cortical gradients of functional connectivity.
\emph{Imaging Neuroscience}.
\item \textbf{Salo T}, Yarkoni T, Nichols TE, Poline JB, Bilgel M, Bottenhorn KL, Jarecka D, Kent JD, Kimbler A, Nielson DM, Oudyk KM, Peraza JA, Pérez A, Reeders PC, Yanes JA, \& Laird AR.
(2023).
NiMARE: Neuroimaging Meta-Analysis Research Environment.
\emph{Aperture}.
\doi{10.52294/001c.87681}.
\item Smith DD, Meca A, Bottenhorn KL, Bartley JE, Riedel MC, \textbf{Salo T}, Peraza JA, Laird RW, Pruden SM, Sutherland MT, Brewe E, \& Laird AR.
(2023).
Task-based attentional and default mode connectivity associated with science and math anxiety profiles among university physics students.
\emph{Trends in Neuroscience and Education}.
\item Meca A, Peraza JA, Riedel MC, Hale W, Pettit JW, Musser ED, \textbf{Salo T}, Flannery JS, Bottenhorn KL, Dick AS, Lobo RP, Ucros LM, Greaves CA, Hawes SW, Sanchez M, Gonzalez MR, Sutherland MT, Gonzalez R, \& Laird AR.
(2023).
Acculturative orientations among Hispanic/Latinx caregivers in the ABCD Study: Associations with caregiver and youth mental health and youth brain function.
\emph{Biological Psychiatry Global Open Science}.
\item Lobo RP, Bottenhorn KL, Riedel MC, Toma AI, Hare MM, Smith DD, Moor AC, Cowan IK, Valdes JA, Bartley JE, \textbf{Salo T}, Boeving ER, Pankey B, Sutherland MT, Musser ED, \& Laird AR.
(2023).
Neural systems underlying RDoC social constructs: An activation likelihood estimation meta-analysis.
\emph{Neuroscience \& Biobehavioral Reviews 144}.
\item Poudel R, Tobia MJ, Riedel MC, \textbf{Salo T}, Flannery JS, Hill-Bowen LD, Dick AS, Laird AR, Parra CM, \& Sutherland MT.
(2022).
Risky decision-making strategies mediate the relationship between amygdala activity and real-world financial savings among individuals from lower income households: A pilot study.
\emph{Behavioural Brain Research}.
\item Flannery JS, Riedel MC, Hill-Bowen LD, Poudel R, Bottenhorn KL, \textbf{Salo T}, Laird AR, Gonzalez R, \& Sutherland MT.
(2022).
Altered large-scale brain network interactions associated with HIV infection and error processing.
\emph{Network Neuroscience}.
\item Flannery JS, Riedel MC, \textbf{Salo T}, Hill-Bowen LD, Poudel R, Adams AR, Laird AR, Gonzalez R, \& Sutherland MT.
(2022).
Interactive effects of HIV infection and cannabis use on insula subregion functional connectivity.
\emph{Journal of Neuroimmune Pharmacology}.
\item Hill-Bowen LD, Riedel MC, \textbf{Salo T}, Flannery JS, Poudel R, Laird AR, \& Sutherland MT.
(2022).
Convergent gray matter alterations across drugs of abuse and network-level implications: A meta-analysis of structural MRI studies.
\emph{Drug and Alcohol Dependence}.
\item Pankey BS, Riedel MC, Cowan I, Bartley JE, Lobo RP, Hill-Bowen LD, \textbf{Salo T}, Musser ED, Sutherland MT, \& Laird AR.
(2022).
Extended functional connectivity of convergent structural alterations among individuals with PTSD: A neuroimaging meta-analysis.
\emph{Behavioral and Brain Functions}.
\item Bouget MH, Kamentsky L, Ghosh SS, Mazzamuto G, Lazari A, Markiewicz CJ, Oostenveld R, Niso G, Halchenko YO, Lipp I, Takerkart S, Toussaint PJ, Khan AR, Nilsonne G, Castelli FM, \textbf{The BIDS Maintainers}\footnote{Member of the BIDS maintainers group}, \& Cohen-Adad J.
(2022).
Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data.
\emph{Frontiers in Neuroscience}.
\doi{10.3389/fnins.2022.871228}.
\item Karakuzu A, Appelhoff S, Auer T, Boudreau M, Feingold F, Khan AR, Lazari A, Markiewicz C, Mulder M, Phillips C, \textbf{Salo T}, Stikov N, Whitaker K, \& Hollander GD.
(2022).
qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data.
\emph{Scientific data}.
\item Clement P, Castellaro M, Okell TW, Thomas DL, Vandemaele P, Elgayar S, Oliver-Taylor A, Kirk T, Woods JG, Vos SB, Kuijer JP, Achten E, Osch MJv, Detre JA, Lu H, Alsop DC, Chappell MA, Hernandez-Garcia L, Petr J, \& Mutsaerts HJ.
(2022).
ASL-BIDS, the brain imaging data structure extension for arterial spin labeling.
\emph{Scientific Data}.
\item Poudel R, Tobia MJ, Riedel MC, \textbf{Salo T}, Flannery JS, Hill-Bowen LD, Dick AS, Laird AR, Parra CM, \& Sutherland MT.
(2022).
Risky decision-making strategies mediate the relationship between amygdala activity and real-world financial savings among individuals from lower income households: A pilot study.
\emph{Behavioural Brain Research}.
\doi{10.1016/j.bbr.2022.113867}.
\item Flannery JS, Riedel MC, Hill-Bowen LD, Poudel R, Bottenhorn KL, \textbf{Salo T}, Laird AR, Gonzalez R, \& Sutherland MT.
(2022).
Altered large-scale brain network interactions associated with HIV infection and error processing.
\emph{Network Neuroscience}.
\doi{10.1162/netn\_a\_00241}.
\item Norgaard M, Matheson GJ, Hansen HD, Thomas A, Searle G, Rizzo G, Veronese M, Giacomel A, Yaqub M, Tonietto M, ..., \textbf{Salo T}, ..., \& Ganz M.
(2022).
PET-BIDS, an extension to the brain imaging data structure for positron emission tomography.
\emph{Scientific data}.
\doi{10.1038/s41597-022-01164-1}.
\item Flannery JS, Riedel MC, \textbf{Salo T}, Hill-Bowen LD, Poudel R, Adams AR, Laird AR, Gonzalez R, \& Sutherland MT.
(2021).
Interactive Effects of HIV Infection and Cannabis Use on Insula Subregion Functional Connectivity.
\emph{Journal of Neuroimmune Pharmacology}.
\doi{10.1007/s11481-021-10005-8}.
\item DuPre E\footnote{\label{note1}Contributed equally}, \textbf{Salo T}\footref{note1}, Ahmed Z, Bandettini PA, Bottenhorn KL, Caballero-Gaudes C, Dowdle LT, Gonzalez-Castillo J, Heunis S, \& Kundu P.
(2021).
TE-dependent analysis of multi-echo fMRI with tedana.
\emph{Journal of Open Source Software}.
\doi{10.21105/joss.03669}.
\item Flannery JS, Riedel MC, \textbf{Salo T}, Poudel R, Laird AR, Gonzalez R, \& Sutherland MT.
(2021).
HIV infection is linked with reduced error-related default mode network suppression and poorer medication management abilities.
\emph{Progress in Neuro-Psychopharmacology and Biological Psychiatry}.
\doi{10.1016/j.pnpbp.2021.110398}.
\item Witt ST, van Ettinger-Veenstra H, \textbf{Salo T}, Riedel MC, \& Laird AR.
(2021).
What executive function network is that? An image-based meta-analysis of network labels.
\emph{Brain topography}.
\doi{10.1007/s10548-021-00847-z}.
\item Hill-Bowen LD, Riedel MC, Poudel R, \textbf{Salo T}, Flannery JS, Camilleri JA, Eickhoff SB, Laird AR, \& Sutherland MT.
(2021).
The cue-reactivity paradigm: An ensemble of networks driving attention and cognition when viewing drug and natural reward-related stimuli.
\emph{Neuroscience \& Biobehavioral Reviews}.
\doi{10.1016/j.neubiorev.2021.08.010}.
\item Poudel R, Riedel MC, \textbf{Salo T}, Flannery JS, Hill-Bowen LD, Eickhoff SB, Laird AR, \& Sutherland MT.
(2020).
Common and distinct brain activity associated with risky and ambiguous decision-making.
\emph{Drug and alcohol dependence}.
\doi{10.1016/j.drugalcdep.2020.107884}.
\item Botvinik-Nezer R, Holzmeister F, Camerer CF, Dreber A, Huber J, Johannesson M, Kirchler M, Iwanir R, Mumford JA, Adcock RA, ..., \textbf{Salo T}, ..., \& Rieck JR.
(2020).
Variability in the analysis of a single neuroimaging dataset by many teams.
\emph{Nature}.
\doi{10.1038/s41586-020-2314-9}.
\item Bielczyk NZ, Ando A, Badhwar A, Caldinelli C, Gao M, Haugg A, Hernandez LM, Ito KL, Kessler D, Lurie D, ..., \textbf{Salo T}, ..., \& Postdoc Special Interest Group
(2020).
Effective self-management for early career researchers in the natural and life sciences.
\emph{Neuron}.
\doi{10.1016/j.neuron.2020.03.015}.
\item Flannery JS, Riedel MC, Bottenhorn KL, Poudel R, \textbf{Salo T}, Hill-Bowen LD, Laird AR, \& Sutherland MT.
(2020).
Meta-analytic clustering dissociates brain activity and behavior profiles across reward processing paradigms.
\emph{Cognitive, Affective, \& Behavioral Neuroscience}.
\doi{10.3758/s13415-019-00763-7}.
\item Morawetz C, Riedel MC, \textbf{Salo T}, Berboth S, Eickhoff SB, Laird AR, \& Kohn N.
(2020).
Multiple large-scale neural networks underlying emotion regulation.
\emph{Neuroscience \& Biobehavioral Reviews}.
\doi{10.1016/j.neubiorev.2020.07.001}.
\item Esteban O, Ciric R, Finc K, Blair RW, Markiewicz CJ, Moodie CA, Kent JD, Goncalves M, DuPre E, Gomez DE, ..., \textbf{Salo T}, ..., \& Gorgolewski KJ.
(2020).
Analysis of task-based functional MRI data preprocessed with fMRIPrep.
\emph{Nature Protocols}.
\doi{10.1038/s41596-020-0327-3}.
\item Bolt T, Nomi JS, Arens R, Vij SG, Riedel M, \textbf{Salo T}, Laird AR, Eickhoff SB, \& Uddin LQ.
(2020).
Ontological dimensions of cognitive-neural mappings.
\emph{Neuroinformatics}.
\doi{10.1007/s12021-020-09454-y}.
\item Yarkoni T, Markiewicz CJ, de la Vega A, Gorgolewski KJ, \textbf{Salo T}, Halchenko YO, McNamara Q, DeStasio K, Poline J, \& Petrov D.
(2019).
PyBIDS: Python tools for BIDS datasets.
\emph{The Journal of Open Source Software}.
\doi{10.21105/joss.01294}.
\item Riedel MC, \textbf{Salo T}, Hays J, Turner MD, Sutherland MT, Turner JA, \& Laird AR.
(2019).
Automated, efficient, and accelerated knowledge modeling of the cognitive neuroimaging literature using the athena toolkit.
\emph{Frontiers in neuroscience}.
\doi{10.3389/fnins.2019.00494}.
\item Gonzalez AA, Bottenhorn KL, Bartley JE, Hayes T, Riedel MC, \textbf{Salo T}, Bravo EI, Odean R, Nazareth A, \& Laird RW.
(2019).
Sex differences in brain correlates of STEM anxiety.
\emph{NPJ science of learning}.
\doi{10.1038/s41539-019-0058-9}.
\item Bartley JE, Riedel MC, \textbf{Salo T}, Boeving ER, Bottenhorn KL, Bravo EI, Odean R, Nazareth A, Laird RW, \& Sutherland MT.
(2019).
Brain activity links performance in science reasoning with conceptual approach.
\emph{NPJ Science of Learning}.
\doi{10.1038/s41539-019-0059-8}.
\item Bartley JE, Boeving ER, Riedel MC, Bottenhorn KL, \textbf{Salo T}, Eickhoff SB, Brewe E, Sutherland MT, \& Laird AR.
(2018).
Meta-analytic evidence for a core problem solving network across multiple representational domains.
\emph{Neuroscience \& biobehavioral reviews}.
\doi{10.1016/j.neubiorev.2018.06.009}.
\item Brewe E, Bartley JE, Riedel MC, Sawtelle V, \textbf{Salo T}, Boeving ER, Bravo EI, Odean R, Nazareth A, \& Bottenhorn KL.
(2018).
Toward a neurobiological basis for understanding learning in university modeling instruction physics courses.
\emph{Frontiers in ICT}.
\doi{10.3389/fict.2018.00010}.
\item Ray KL, Lesh TA, Howell AM, \textbf{Salo T}, Ragland JD, MacDonald AW, Gold JM, Silverstein SM, Barch DM, \& Carter CS.
(2017).
Functional network changes and cognitive control in schizophrenia.
\emph{NeuroImage: Clinical}.
\doi{10.1016/j.nicl.2017.05.001}.
\item Lopez-Garcia P, Lesh TA, \textbf{Salo T}, Barch DM, MacDonald AW, Gold JM, Ragland JD, Strauss M, Silverstein SM, \& Carter CS.
(2016).
The neural circuitry supporting goal maintenance during cognitive control: a comparison of expectancy AX-CPT and dot probe expectancy paradigms.
\emph{Cognitive, Affective, \& Behavioral Neuroscience}.
\doi{10.3758/s13415-015-0384-1}.
\item Phillips RC, \textbf{Salo T}, \& Carter CS. (2015).
Distinct neural correlates for attention lapses in patients with schizophrenia and healthy participants.
\emph{Frontiers in human neuroscience}.
\doi{10.3389/fnhum.2015.00502}.
\end{enumerate}
\bigskip
\begin{center}\sectionstyle{PREPRINTS}\end{center}
\begin{enumerate}
\item Peraza JA, \textbf{Salo T}, Riedel MC, Bottenhorn KL, Poline J, Dockès J, Kent JD, Bartley JE, Flannery JS, Hill-Bowen LD, Lobo RP, Poudel R, Ray KL, Robinson JL, Laird RW, Sutherland MT, Vega Adl, \& Laird AR.
(2023).
Meta-analytic decoding of the cortical gradient of functional connectivity.
\emph{bioRxiv}.
\item Mehta KP, \textbf{Salo T}, Madison T, Adebimpe A, Bassett DS, Bertolero M, Cieslak M, Covitz S, Houghton A, Keller AS, Luo A, Dominguez OM, Nelson S, Shafiei G, Shanmugan S, Shinohara R, Sydnor VJ, Feczko E, Fair DA, \& Satterthwaite TD.
(2023).
XCP-D: A Robust Pipeline for the post-processing of fMRI data.
\emph{bioRxiv}.
\item Van AN, Montez DF, Laumann TO, Suljic V, Madison T, Baden NJ, Ramirez-Perez N, Scheidter KM, Monk JS, Whiting FI, Adeyemo B, Chauvin RJ, Krimmel SR, Metoki A, Rajesh A, Roland JL, \textbf{Salo T}, Wang A, Weldon KB, Sotiras A, Shimony JS, Kay BP, Nelson SM, Tervo-Clemmens B, Marek SA, Vizioli L, Yacoub E, Satterthwaite TD, Gordon EM, Fair DA, Tisdall D, \& Dosenbach NU.
(2023).
Framewise multi-echo distortion correction for superior functional MRI.
\emph{bioRxiv}.
\item Diveica V, Riedel MC, \textbf{Salo T}, Laird AR, Jackson RL, \& Binney RJ.
(2023).
Graded functional organisation in the left inferior frontal gyrus: evidence from task-free and task-based functional connectivity.
\emph{bioRxiv}.
\item Shafiei G, Keller AS, Bertolero M, Shanmugan S, Bassett DS, Chen AA, Covitz S, Houghton A, Luo A, Mehta K, \textbf{Salo T}, Shinohara RT, Fair D, Hallquist MN, \& Satterthwaite TD.
(2023).
Generalizable links between symptoms of borderline personality disorder and functional connectivity.
\emph{bioRxiv}.
\item Luo A, Sydnor VJ, Pines A, Larsen B, Alexander-Bloch AF, Cieslak M, Covitz S, Chen A, Esper NB, Feczko E, Franco AR, Gur RE, Gur RC, Houghton A, Hu F, Keller AS, Kiar G, Mehta K, Salum GA, Tapera T, Xu T, Zhao C, Fair DA, \textbf{Salo T}, Shinohara RT, Milham MP, \& Satterthwaite TD.
(2023).
Functional Connectivity Development along the Sensorimotor-Association Axis Enhances the Cortical Hierarchy.
\emph{bioRxiv}.
\item Poldrack RA, Markiewicz CJ, Appelhoff S, Ashar YK, Auer T, Baillet S, Bansal S, Beltrachini L, Benar CG, Bertazzoli G, Bhogawar S, Blair RW, Bortoletto M, Boudreau M, Brooks TL, Calhoun VD, Castelli FM, Clement P, Cohen AL, Cohen-Adad J, d'Ambrosio S, Hollander Gd, Iglesia-Vayá Mdl, Vega Adl, Delorme A, Devinsky O, Draschkow D, Duff EP, DuPre E, Earl E, Esteban O, Feingold FW, Flandin G, Galassi A, Gallitto G, Ganz M, Gau R, Gholam J, Ghosh SS, Giacomel A, Gillman AG, Gleeson P, Gramfort A, Guay S, Guidali G, Halchenko YO, Handwerker DA, Hardcastle N, Herholz P, Hermes D, Honey CJ, Innis RB, Ioanas H, Jahn A, Karakuzu A, Keator DB, Kiar G, Kincses B, Laird AR, Lau JC, Lazari A, Legarreta JH, Li A, Li X, Love BC, Lu H, Maumet C, Mazzamuto G, Meisler SL, Mikkelsen M, Mutsaerts H, Nichols TE, Nikolaidis A, Nilsonne G, Niso G, Norgaard M, Okell TW, Oostenveld R, Ort E, Park PJ, Pawlik M, Pernet CR, Pestilli F, Petr J, Phillips C, Poline J, Pollonini L, Raamana PR, Ritter P, Rizzo G, Robbins KA, Rockhill AP, Rogers C, Rokem A, Rorden C, Routier A, Saborit-Torres JM, \textbf{Salo T}, Schirner M, Smith RE, Spisak T, Sprenger J, Swann NC, Szinte M, Takerkart S, Thirion B, Thomas AG, Torabian S, Varoquaux G, Voytek B, Welzel J, Wilson M, Yarkoni T, \& Gorgolewski KJ.
(2023).
The past, present, and future of the brain imaging data structure (BIDS).
\emph{arXiv}.
\item Bottenhorn K, Bartley J, Riedel M, \textbf{Salo T}, Bravo E, Odean R, Nazareth A, Laird R, Pruden S, \& Sutherland M.
(2021).
Intelligence and academic performance: Is it all in your head?.
\emph{bioRxiv}.
\doi{10.1101/2021.01.23.427928}.
\item Bartley JE, Riedel MC, \textbf{Salo T}, Bottenhorn KL, Boeving ER, Laird RW, Sutherland MT, Pruden SM, Brewe E, \& Laird AR.
(2019).
Sex and pedagogy influences in physics learning-related reorganization of brain activation.
\emph{bioRxiv}.
\doi{10.1101/791301}.
\end{enumerate}
\newpage
\begin{center}\sectionstyle{OPEN DATASETS}\end{center}
\begin{enumerate}
\item \textbf{Salo T}\footnote{\label{note2}Contributed equally}, Bottenhorn KL\cref{note2}, Riedel MC, Flannery JS, Kimbler A, Laird RW, \& Laird AR.
(2020).
Dense Investigation of Variability of Affect (DIVA).
OpenNeuro [Dataset].
\doi{10.18112/openneuro.ds002278.v1.0.1}.
\end{enumerate}
\bigskip
\begin{center}\sectionstyle{INVITED TALKS AND SOFTWARE DEMONSTRATIONS}\end{center}
\begin{enumerate}
\item Laird AR \& \textbf{Salo T}.
(2021).
Meta-analysis and reproducibility.
Presented at Neurohackademy 2021; virtual.
More information \textlink{https://neurohackademy.org/course/meta-analysis-and-reproducibility-3/}{here}.
\item \textbf{Salo T}.
(2021).
Hands-on tutorial with NiMARE.
Presented at the Organization for Human Brain Mapping 2021 Annual Meeting; virtual.
More information \textlink{https://nbclab.github.io/talks/salo-ohbm-nimare}{here}.
\item \textbf{Salo T} \& Uruñuela E.
(2020).
How to Start an Open Science Project from Scratch: ICA-AROMA.
Presented at BrainHack Donostia; virtual.
More information \textlink{https://nbclab.github.io/presentations/salo-neurosynth-presentation}{here}.
\item \textbf{Salo T}.
(2020).
BIDS for MRI: Structure and Conversion.